RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C PRO3P32263 286 aaKnown RBP5.6□□□□□ -1.51
DEF1YKL054C ZUO1P32527 433 aaKnown RBP5.6□□□□□ -1.51
DEF1YKL054C MAL32P38158 584 aa5.6□□□□□ -1.51
DEF1YKL054C RTC3P38804 111 aaPredicted RBP5.6□□□□□ -1.51
DEF1YKL054C PCF11P39081 626 aaPredicted RBP5.6□□□□□ -1.51
DEF1YKL054C COG2P53271 262 aa5.6□□□□□ -1.51
DEF1YKL054C MAL12P53341 584 aa5.6□□□□□ -1.51
DEF1YKL054C MMT1Q03218 510 aa5.6□□□□□ -1.51
DEF1YKL054C TRS23Q03784 219 aa5.6□□□□□ -1.51
DEF1YKL054C BNA7Q04066 261 aa5.6□□□□□ -1.51
DEF1YKL054C DLT1Q04216 342 aa5.6□□□□□ -1.51
DEF1YKL054C YLR224WQ05947 369 aa5.6□□□□□ -1.51
DEF1YKL054C ARO10Q06408 635 aa5.6□□□□□ -1.51
DEF1YKL054C PAM18Q07914 168 aa5.6□□□□□ -1.51
DEF1YKL054C YLR040CQ07988 224 aa5.6□□□□□ -1.51
DEF1YKL054C SUT2Q12286 268 aa5.6□□□□□ -1.51
DEF1YKL054C RHO1P06780 209 aaKnown RBP5.6□□□□□ -1.51
DEF1YKL054C RRT12P25381 491 aa5.6□□□□□ -1.51
DEF1YKL054C BIG1P38813 335 aa5.6□□□□□ -1.51
DEF1YKL054C FMP52P40008 231 aa5.6□□□□□ -1.51
DEF1YKL054C UTP25P40498 721 aaKnown RBP5.6□□□□□ -1.51
DEF1YKL054C ERG10P41338 398 aaKnown RBP5.6□□□□□ -1.51
DEF1YKL054C TRM112P53738 135 aaPredicted RBP5.6□□□□□ -1.51
DEF1YKL054C AIM33Q04516 312 aa5.6□□□□□ -1.51
DEF1YKL054C BUR2Q05949 395 aa5.6□□□□□ -1.51
DEF1YKL054C RAD34Q06665 692 aa5.6□□□□□ -1.51
DEF1YKL054C SDO1Q07953 250 aaKnown RBP5.6□□□□□ -1.51
DEF1YKL054C ENB1Q08299 606 aa5.6□□□□□ -1.51
DEF1YKL054C FSH3Q99369 266 aa5.6□□□□□ -1.51
DEF1YKL054C CKI1P20485 582 aa5.59□□□□□ -1.51
DEF1YKL054C CLB2P24869 491 aa5.59□□□□□ -1.51
DEF1YKL054C APL3P38065 1025 aa5.59□□□□□ -1.51
DEF1YKL054C LDB7P38210 180 aa5.59□□□□□ -1.51
DEF1YKL054C MMS21P38632 267 aa5.59□□□□□ -1.51
DEF1YKL054C SCD6P45978 349 aaKnown RBP RIP-Chip data5.59□□□□□ -1.51not detected
DEF1YKL054C TOS2P50078 622 aa5.59□□□□□ -1.51
DEF1YKL054C TAF6P53040 516 aa5.59□□□□□ -1.51
DEF1YKL054C NUP116Q02630 1113 aa5.59□□□□□ -1.51
DEF1YKL054C RPM2Q02773 1202 aa5.59□□□□□ -1.51
DEF1YKL054C HSP31Q04432 237 aa5.59□□□□□ -1.51
DEF1YKL054C ACK1Q07622 623 aaPredicted RBP5.59□□□□□ -1.51
DEF1YKL054C AAD15Q08361 143 aa5.59□□□□□ -1.51
DEF1YKL054C SUC2P00724 532 aa5.59□□□□□ -1.52
DEF1YKL054C OPI3P05375 206 aa5.59□□□□□ -1.52
DEF1YKL054C YLL053CP0CD98 152 aa5.59□□□□□ -1.52
DEF1YKL054C COQ1P18900 473 aa5.59□□□□□ -1.52
DEF1YKL054C CKA2P19454 339 aa5.59□□□□□ -1.52
DEF1YKL054C CYS4P32582 507 aaKnown RBP5.59□□□□□ -1.52
DEF1YKL054C DOA1P36037 715 aa5.59□□□□□ -1.52
DEF1YKL054C MIA40P36046 403 aa5.59□□□□□ -1.52
DEF1YKL054C YKL071WP36086 256 aa5.59□□□□□ -1.52
DEF1YKL054C PRS4P38063 326 aaPredicted RBP5.59□□□□□ -1.52
DEF1YKL054C DSE1P40077 573 aa5.59□□□□□ -1.52
DEF1YKL054C SLM1P40485 686 aa5.59□□□□□ -1.52
DEF1YKL054C DSN1P40568 576 aa5.59□□□□□ -1.52
DEF1YKL054C HIT1P46973 164 aa5.59□□□□□ -1.52
DEF1YKL054C LYS20P48570 428 aaKnown RBP5.59□□□□□ -1.52
DEF1YKL054C RTT103Q05543 409 aa5.59□□□□□ -1.52
DEF1YKL054C COQ11Q05892 277 aa5.59□□□□□ -1.52
DEF1YKL054C RPO26P20435 155 aa5.58□□□□□ -1.52
DEF1YKL054C ICL1P28240 557 aaPredicted RBP5.58□□□□□ -1.52
DEF1YKL054C MAK5P38112 773 aaPredicted RBP5.58□□□□□ -1.52
DEF1YKL054C SNL1P40548 159 aa5.58□□□□□ -1.52
DEF1YKL054C BIO4P53630 237 aa5.58□□□□□ -1.52
DEF1YKL054C GCN5Q03330 439 aa5.58□□□□□ -1.52
DEF1YKL054C SNU56Q03782 492 aaKnown RBP5.58□□□□□ -1.52
DEF1YKL054C ARR2Q06597 130 aa5.58□□□□□ -1.52
DEF1YKL054C CDC33P07260 213 aaKnown RBP5.58□□□□□ -1.52
DEF1YKL054C IMA3P0CW40 589 aa5.58□□□□□ -1.52
DEF1YKL054C IMA4P0CW41 589 aa5.58□□□□□ -1.52
DEF1YKL054C TCP1P12612 559 aaKnown RBP5.58□□□□□ -1.52
DEF1YKL054C CLN3P13365 580 aa5.58□□□□□ -1.52
DEF1YKL054C RAD24P32641 659 aa5.58□□□□□ -1.52
DEF1YKL054C TOA2P32774 122 aa5.58□□□□□ -1.52
DEF1YKL054C SKG6P32900 734 aaPredicted RBP5.58□□□□□ -1.52
DEF1YKL054C PFS1P38872 237 aa5.58□□□□□ -1.52
DEF1YKL054C SAD1P43589 448 aa5.58□□□□□ -1.52
DEF1YKL054C DIA1P54005 336 aa5.58□□□□□ -1.52
DEF1YKL054C ATG26Q06321 1198 aa5.58□□□□□ -1.52
DEF1YKL054C CMS1Q07897 291 aaKnown RBP5.58□□□□□ -1.52
DEF1YKL054C IMA2Q08295 589 aa5.58□□□□□ -1.52
DEF1YKL054C GLE1Q12315 538 aa5.58□□□□□ -1.52
DEF1YKL054C ATP1P07251 545 aaKnown RBP5.57□□□□□ -1.52
DEF1YKL054C CSM1P25651 190 aa5.57□□□□□ -1.52
DEF1YKL054C GCG1P32656 232 aaKnown RBP5.57□□□□□ -1.52
DEF1YKL054C TSA1P34760 196 aaKnown RBP5.57□□□□□ -1.52
DEF1YKL054C RIB1P38066 345 aa5.57□□□□□ -1.52
DEF1YKL054C SPT20P50875 604 aa5.57□□□□□ -1.52
DEF1YKL054C BUD32P53323 261 aa5.57□□□□□ -1.52
DEF1YKL054C YPL068CQ02749 293 aa5.57□□□□□ -1.52
DEF1YKL054C YMR209CQ03648 457 aa5.57□□□□□ -1.52
DEF1YKL054C SSK22P25390 1331 aaPredicted RBP5.57□□□□□ -1.52
DEF1YKL054C RPL35AP0CX84 120 aaKnown RBP5.56□□□□□ -1.52
DEF1YKL054C RPL35BP0CX85 120 aaKnown RBP5.56□□□□□ -1.52
DEF1YKL054C MXR2P25566 168 aa5.56□□□□□ -1.52
DEF1YKL054C FUN19P28003 413 aaPredicted RBP5.56□□□□□ -1.52
DEF1YKL054C PPA2P28239 310 aa5.56□□□□□ -1.52
DEF1YKL054C SPT10P35208 640 aa5.56□□□□□ -1.52
DEF1YKL054C BTT1P40314 149 aaPredicted RBP5.56□□□□□ -1.52
DEF1YKL054C TRS85P46944 698 aa5.56□□□□□ -1.52
Retrieved 100 of 5,963 RNA–protein pairs in 24 ms