RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 AZI2Q9H6S1 392 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 SETD4Q9NVD3 440 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 ERAP1Q9NZ08 941 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 TCEAL9Q9UHQ7 104 aa11.14□□□□□ -0.63
CLN3-261ENST00000637686 EMSYQ7Z589 1322 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 IGKV6D-21A0A0A0MT36 114 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 BACH1O14867 736 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 GAS7O60861 476 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 GCFC2P16383 781 aaKnown RBP11.13□□□□□ -0.63
CLN3-261ENST00000637686 STAT5BP51692 787 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 CCL23P55773 120 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 KRT76Q01546 638 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 RESTQ13127 1097 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 PKP1Q13835 747 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 LRCH2Q5VUJ6 765 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 SWSAP1Q6NVH7 229 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 ABHD15Q6UXT9 468 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 ETNPPLQ8TBG4 499 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 TNPO1Q92973 898 aaKnown RBP11.13□□□□□ -0.63
CLN3-261ENST00000637686 ATP6V0A1Q93050 837 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 GBP4Q96PP9 640 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 RIT2Q99578 217 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 NAP1L4Q99733 375 aaKnown RBP11.13□□□□□ -0.63
CLN3-261ENST00000637686 TEKT3Q9BXF9 490 aa11.13□□□□□ -0.63
CLN3-261ENST00000637686 KIF28PB7ZC32 967 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 WNT7AO00755 349 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 TREHO43280 583 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 CHMP2AO43633 222 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 PSMD10O75832 226 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 PSAPP07602 524 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 GNAT1P11488 350 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 CSF2RAP15509 400 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 ATP2B1P20020 1258 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 HOXC8P31273 242 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 TRAPPC10P48553 1259 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 EPHB4P54760 987 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 FPGSQ05932 587 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 PTK7Q13308 1070 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 GNL2Q13823 731 aaKnown RBP11.12□□□□□ -0.63
CLN3-261ENST00000637686 HABP4Q5JVS0 413 aaKnown RBP11.12□□□□□ -0.63
CLN3-261ENST00000637686 PLPPR4Q7Z2D5 763 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 CCDC60Q8IWA6 550 aaPredicted RBP11.12□□□□□ -0.63
CLN3-261ENST00000637686 SMAP1Q8IYB5 467 aaPredicted RBP11.12□□□□□ -0.63
CLN3-261ENST00000637686 TMEM199Q8N511 208 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 DHX38Q92620 1227 aaKnown RBP11.12□□□□□ -0.63
CLN3-261ENST00000637686 WNT8BQ93098 351 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 WNT8AQ9H1J5 351 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 UNC45AQ9H3U1 944 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 ZNF302Q9NR11 478 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 SAMM50Q9Y512 469 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 PCDHA10Q9Y5I2 948 aa11.12□□□□□ -0.63
CLN3-261ENST00000637686 MORC2Q9Y6X9 1032 aaPredicted RBP11.12□□□□□ -0.63
CLN3-261ENST00000637686 TRIP12Q14669 1992 aaPredicted RBP11.12□□□□□ -0.63
CLN3-261ENST00000637686 NRCAMQ92823 1304 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 WDR64B1ANS9 1081 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 MARCH6O60337 910 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 ACRP10323 421 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 PTMSP20962 102 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 SFNP31947 248 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 IGBP1P78318 339 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 PPFIA1Q13136 1202 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 PPIGQ13427 754 aaKnown RBP eCLIP11.11□□□□□ -0.63
CLN3-261ENST00000637686 BFSP2Q13515 415 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 PLCB4Q15147 1175 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 SHHQ15465 462 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 GRIK4Q16099 956 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 CSPP1Q1MSJ5 1256 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 FAM160B1Q5W0V3 765 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 PDXDC2PQ6P474 469 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 POTEDQ86YR6 584 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 NOSTRINQ8IVI9 506 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 TDHQ8IZJ6 230 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 RETREG2Q8NC44 543 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 CAGE1Q8TC20 777 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 AFAP1L1Q8TED9 768 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 LMBR1Q8WVP7 490 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 HAS1Q92839 578 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 SCLYQ96I15 445 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 FAM20AQ96MK3 541 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 KCNMB3Q9NPA1 279 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 DISC1Q9NRI5 854 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 GABBR1Q9UBS5 961 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 TRPC6Q9Y210 931 aa11.11□□□□□ -0.63
CLN3-261ENST00000637686 POTEB3A0JP26 581 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 PITPNM1O00562 1244 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 TBX3O15119 743 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 BAG4O95429 457 aaKnown RBP11.1□□□□□ -0.63
CLN3-261ENST00000637686 IQCF3P0C7M6 154 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 CKBP12277 381 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 INSRRP14616 1297 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 ATP4AP20648 1035 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 MCM7P33993 719 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 SLC26A2P50443 739 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 JAK3P52333 1124 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 ADAM17P78536 824 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 ORC2Q13416 577 aaPredicted RBP11.1□□□□□ -0.63
CLN3-261ENST00000637686 ZNF174Q15697 407 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 CALCRLQ16602 461 aa11.1□□□□□ -0.63
CLN3-261ENST00000637686 TRIM71Q2Q1W2 868 aaKnown RBP11.1□□□□□ -0.63
CLN3-261ENST00000637686 RILPL1Q5EBL4 403 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms