RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 CAGE1Q8TC20 777 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 TGS1Q96RS0 853 aaKnown RBP13.26□□□□□ -0.29
CLN3-257ENST00000637110 MXRA8Q9BRK3 442 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 SDF4Q9BRK5 362 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 C16orf70Q9BSU1 422 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 AGXT2Q9BYV1 514 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 ZDBF2Q9HCK1 2354 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 PRKAG3Q9UGI9 489 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 CACNA1AO00555 2505 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 TET1Q8NFU7 2136 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 PTPRSQ13332 1948 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 MAFGO15525 162 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 SMIM10L2AP0DMW4 78 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 SMIM10L2BP0DMW5 78 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 HOXD8P13378 290 aaPredicted RBP13.25□□□□□ -0.29
CLN3-257ENST00000637110 IFNAR1P17181 557 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 TCF7P36402 384 aaPredicted RBP13.25□□□□□ -0.29
CLN3-257ENST00000637110 PTPN5P54829 565 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 HFE2Q6ZVN8 426 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 LRRC8DQ7L1W4 858 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 TEX2Q8IWB9 1127 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 REXO1Q8N1G1 1221 aaKnown RBP13.25□□□□□ -0.29
CLN3-257ENST00000637110 CCDC148Q8NFR7 591 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 SEPT1Q8WYJ6 367 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 GLG1Q92896 1179 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 ATP6V0A1Q93050 837 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 ZNF274Q96GC6 653 aaPredicted RBP13.25□□□□□ -0.29
CLN3-257ENST00000637110 PRRX2Q99811 253 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 RNF26Q9BY78 433 aaPredicted RBP13.25□□□□□ -0.29
CLN3-257ENST00000637110 SUGCTQ9HAC7 445 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 MTUS1Q9ULD2 1270 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 DOCK5Q9H7D0 1870 aa13.25□□□□□ -0.29
CLN3-257ENST00000637110 NID2Q14112 1375 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 GNAT1P11488 350 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 SELPP16109 830 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 KCNA2P16389 499 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 EVCP57679 992 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 NLRP5P59047 1200 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 ERVK-21P61565 698 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 ARHGAP4P98171 946 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 PTK7Q13308 1070 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 PKN1Q16512 942 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 MCTP2Q6DN12 878 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 SPRED2Q7Z698 418 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 TRIM50Q86XT4 487 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 CYP2W1Q8TAV3 490 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 BICD2Q8TD16 824 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 AFAP1L1Q8TED9 768 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 RAD9AQ99638 391 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 ZMYND12Q9H0C1 365 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 SLKQ9H2G2 1235 aaPredicted RBP13.24□□□□□ -0.29
CLN3-257ENST00000637110 JPH1Q9HDC5 661 aaPredicted RBP13.24□□□□□ -0.29
CLN3-257ENST00000637110 KCNH7Q9NS40 1196 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 VPS54Q9P1Q0 977 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 TELO2Q9Y4R8 837 aa13.24□□□□□ -0.29
CLN3-257ENST00000637110 TRIP12Q14669 1992 aaPredicted RBP13.23□□□□□ -0.29
CLN3-257ENST00000637110 ESYT2A0FGR8 921 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 LCHNA4D1U4 455 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 DDX39AO00148 427 aaKnown RBP13.23□□□□□ -0.29
CLN3-257ENST00000637110 ARP10275 920 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 CKBP12277 381 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 MARK3P27448 753 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 SREBF1P36956 1147 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 THPOP40225 353 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 CLK2P49760 499 aaKnown RBP13.23□□□□□ -0.29
CLN3-257ENST00000637110 WDR5P61964 334 aaKnown RBP13.23□□□□□ -0.29
CLN3-257ENST00000637110 NTRK3Q16288 839 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 PTPROQ16827 1216 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 CEP55Q53EZ4 464 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 NEK9Q8TD19 979 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 DHX38Q92620 1227 aaKnown RBP13.23□□□□□ -0.29
CLN3-257ENST00000637110 RNPEPQ9H4A4 650 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 AZI2Q9H6S1 392 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 SETD4Q9NVD3 440 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 SLC9A2Q9UBY0 812 aa13.23□□□□□ -0.29
CLN3-257ENST00000637110 USP34Q70CQ2 3546 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 GSTTP1A0A1W2PQM5 241 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 TREHO43280 583 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 PARNO95453 639 aaKnown RBP13.22□□□□□ -0.29
CLN3-257ENST00000637110 ANAPC15P60006 121 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 ZP2Q05996 745 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 ANKRD1Q15327 319 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 TIGD5Q53EQ6 642 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 PLA2G4DQ86XP0 818 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 ADHFE1Q8IWW8 467 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 RASGRP4Q8TDF6 673 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 CTAGE1Q96RT6 745 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 POP1Q99575 1024 aaKnown RBP13.22□□□□□ -0.29
CLN3-257ENST00000637110 SMARCAD1Q9H4L7 1026 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 AGO4Q9HCK5 861 aaKnown RBP13.22□□□□□ -0.29
CLN3-257ENST00000637110 ERAP1Q9NZ08 941 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 TCEAL9Q9UHQ7 104 aa13.22□□□□□ -0.29
CLN3-257ENST00000637110 LINC01553A4QN01 128 aa13.21□□□□□ -0.29
CLN3-257ENST00000637110 H3BQ06 376 aaPredicted RBP13.21□□□□□ -0.29
CLN3-257ENST00000637110 EFCAB14O75071 495 aa13.21□□□□□ -0.29
CLN3-257ENST00000637110 CDKL5O76039 1030 aa13.21□□□□□ -0.29
CLN3-257ENST00000637110 GJB5O95377 273 aa13.21□□□□□ -0.29
CLN3-257ENST00000637110 DEXIO95424 95 aa13.21□□□□□ -0.29
CLN3-257ENST00000637110 IGBP1P78318 339 aa13.21□□□□□ -0.29
CLN3-257ENST00000637110 PPFIA1Q13136 1202 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms