RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RRADP55042 308 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 GPR85P60893 370 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 DPP8Q6V1X1 898 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-208ENST00000625916 IFNL3Q8IZI9 196 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 EDAQ92838 391 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 EXTL1Q92935 676 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 ZNF503Q96F45 646 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 ZFYVE21Q9BQ24 234 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 PDGFDQ9GZP0 370 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-208ENST00000625916 OAZ3Q9UMX2 235 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 IQCA1LA6NCM1 817 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 ACOT7O00154 380 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 CDC14BO60729 498 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 RAD17O75943 681 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 CR2P20023 1033 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 EPHA5P54756 1037 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 PTH1RQ03431 593 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 ZMAT1Q5H9K5 638 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 HABP4Q5JVS0 413 aaKnown RBP4.85□□□□□ -1.63
SCN1A-208ENST00000625916 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.85□□□□□ -1.63
SCN1A-208ENST00000625916 HNRNPLLQ8WVV9 542 aaKnown RBP4.85□□□□□ -1.63
SCN1A-208ENST00000625916 SGSM3Q96HU1 749 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 OR14A2Q96R54 314 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 ALG1Q9BT22 464 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 CD244Q9BZW8 370 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 C12orf65Q9H3J6 166 aaKnown RBP4.85□□□□□ -1.63
SCN1A-208ENST00000625916 IPPKQ9H8X2 491 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 ARHGAP28Q9P2N2 729 aa4.85□□□□□ -1.63
SCN1A-208ENST00000625916 WDR33Q9C0J8 1336 aaKnown RBP4.84□□□□□ -1.63
SCN1A-208ENST00000625916 BLACEA4D250 179 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 UNCXA6NJT0 531 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 FGFR1P11362 822 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 PABPC1P11940 636 aaKnown RBP4.84□□□□□ -1.63
SCN1A-208ENST00000625916 MCM7P33993 719 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 IFRD2Q12894 506 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-208ENST00000625916 TOP3AQ13472 1001 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-208ENST00000625916 NOLC1Q14978 699 aaKnown RBP eCLIP4.84□□□□□ -1.63
SCN1A-208ENST00000625916 NTRK3Q16288 839 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 RNF151Q2KHN1 245 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 LSM12Q3MHD2 195 aaKnown RBP4.84□□□□□ -1.63
SCN1A-208ENST00000625916 WDR72Q3MJ13 1102 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 NSMFQ6X4W1 530 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 POLNQ7Z5Q5 900 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 CELF2-AS1Q8N7Q2 184 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 FAM89AQ96GI7 184 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 DPYSL5Q9BPU6 564 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 C11orf21Q9P2W6 132 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 NR2E1Q9Y466 385 aa4.84□□□□□ -1.63
SCN1A-208ENST00000625916 DGCR2P98153 550 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 ARID5AQ03989 594 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 DBPQ10586 325 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-208ENST00000625916 DDR2Q16832 855 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 BTBD8Q5XKL5 378 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 IGFL4Q6B9Z1 124 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 STYK1Q6J9G0 422 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 EP400NLQ6ZTU2 488 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 DPH6Q7L8W6 267 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 C1orf210Q8IVY1 113 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 OSBP2Q969R2 916 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 CHFRQ96EP1 664 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 SCYL1Q96KG9 808 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 ARHGEF4Q9NR80 690 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 RIC8BQ9NVN3 520 aa4.83□□□□□ -1.64
SCN1A-208ENST00000625916 TRAV20A0A0B4J274 112 aa4.82□□□□□ -1.64
SCN1A-208ENST00000625916 NARSO43776 548 aaKnown RBP4.82□□□□□ -1.64
SCN1A-208ENST00000625916 FGRP09769 529 aa4.82□□□□□ -1.64
SCN1A-208ENST00000625916 ETV4P43268 484 aa4.82□□□□□ -1.64
SCN1A-208ENST00000625916 Q6ZSN1 163 aa4.82□□□□□ -1.64
SCN1A-208ENST00000625916 NLGN4XQ8N0W4 816 aa4.82□□□□□ -1.64
SCN1A-208ENST00000625916 PLA2G12BQ9BX93 195 aa4.82□□□□□ -1.64
SCN1A-208ENST00000625916 TRIM8Q9BZR9 551 aa4.82□□□□□ -1.64
SCN1A-208ENST00000625916 SLC30A1Q9Y6M5 507 aa4.82□□□□□ -1.64
SCN1A-208ENST00000625916 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-208ENST00000625916 PLSCR1O15162 318 aa4.81□□□□□ -1.64
SCN1A-208ENST00000625916 HMGCRP04035 888 aa4.81□□□□□ -1.64
SCN1A-208ENST00000625916 PTPN1P18031 435 aaKnown RBP4.81□□□□□ -1.64
SCN1A-208ENST00000625916 ADCY8P40145 1251 aa4.81□□□□□ -1.64
SCN1A-208ENST00000625916 KCNQ1P51787 676 aa4.81□□□□□ -1.64
SCN1A-208ENST00000625916 SMN1Q16637 294 aaKnown RBP4.81□□□□□ -1.64
SCN1A-208ENST00000625916 ANKS3Q6ZW76 656 aa4.81□□□□□ -1.64
SCN1A-208ENST00000625916 SH3RF2Q8TEC5 729 aa4.81□□□□□ -1.64
SCN1A-208ENST00000625916 PLEKHG4BQ96PX9 1271 aa4.81□□□□□ -1.64
SCN1A-208ENST00000625916 CEP89Q96ST8 783 aa4.81□□□□□ -1.64
SCN1A-208ENST00000625916 PUF60Q9UHX1 559 aaKnown RBP4.81□□□□□ -1.64
SCN1A-208ENST00000625916 TCRBV5S4A2TA0A5A2 114 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 FAM90A27PA6NNH2 459 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 ARHGAP6O43182 974 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 C1SP09871 688 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 PTGS1P23219 599 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 ACRV1P26436 265 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 DNAJA1P31689 397 aaKnown RBP4.8□□□□□ -1.64
SCN1A-208ENST00000625916 RPS19P39019 145 aaKnown RBP4.8□□□□□ -1.64
SCN1A-208ENST00000625916 INHBEP58166 350 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 YOD1Q5VVQ6 348 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-208ENST00000625916 MAMDC4Q6UXC1 1216 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 ARHGAP36Q6ZRI8 547 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 MTDHQ86UE4 582 aaKnown RBP4.8□□□□□ -1.64
SCN1A-208ENST00000625916 MCF2L2Q86YR7 1114 aa4.8□□□□□ -1.64
SCN1A-208ENST00000625916 LRRC47Q8N1G4 583 aaKnown RBP4.8□□□□□ -1.64
SCN1A-208ENST00000625916 ZNF808Q8N4W9 903 aaPredicted RBP4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms