RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 DDIT3P35638 169 aa18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 NBPF20Q3BBV1 942 aa18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 UTP14CQ5TAP6 766 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 SWSAP1Q6NVH7 229 aa18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 PDXDC2PQ6P474 469 aa18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 KCTD17Q8N5Z5 321 aa18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 PCYT2Q99447 389 aa18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 CFAP45Q9UL16 551 aa18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 RBM19Q9Y4C8 960 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 NRCAMQ92823 1304 aa18.62■□□□□ 0.57
SHKBP1-219ENST00000599575 GRIN2DO15399 1336 aa18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 IGSF9BQ9UPX0 1349 aa18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 CHMP2AO43633 222 aa18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 RPLP2P05387 115 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 QARSP47897 775 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 PSMC5P62195 406 aa18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 NBR1Q14596 966 aa18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 SF3A1Q15459 793 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 CCDC60Q8IWA6 550 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 IGSF22Q8N9C0 903 aa18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 BBXQ8WY36 941 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 AK8Q96MA6 479 aa18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 TSHZ2Q9NRE2 1034 aa18.61■□□□□ 0.57
SHKBP1-219ENST00000599575 RRN3P2A6NIE6 340 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 SLC26A4O43511 780 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 HBP1O60381 514 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 YEATS4O95619 227 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 HOXC8P31273 242 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 NASPP49321 788 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 ATN1P54259 1190 aaPredicted RBP18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 PSMC6P62333 389 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 PKP1Q13835 747 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 HAUS3Q68CZ6 603 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 ATP8B4Q8TF62 1192 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 GJA10Q969M2 543 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 UIMC1Q96RL1 719 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 HSD17B14Q9BPX1 270 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 NRBP2Q9NSY0 501 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 GABBR1Q9UBS5 961 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 GTF2IRD1Q9UHL9 959 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 TELO2Q9Y4R8 837 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 PPME1Q9Y570 386 aa18.6■□□□□ 0.57
SHKBP1-219ENST00000599575 COL1A2P08123 1366 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 POTEB3A0JP26 581 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 LYPLA2O95372 231 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 TECP42680 631 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 RTP1P59025 263 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 SLC39A14Q15043 492 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 LRRC26Q2I0M4 334 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 XKR3Q5GH77 459 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 NCAPH2Q6IBW4 605 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 POTEBQ6S5H4 581 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 TRIM50Q86XT4 487 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 FAM126BQ8IXS8 530 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 C4orf19Q8IY42 314 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 ZSWIM4Q9H7M6 989 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 TUFT1Q9NNX1 390 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 LRWD1Q9UFC0 647 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 NR2E3Q9Y5X4 410 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 SCN10AQ9Y5Y9 1956 aa18.59■□□□□ 0.57
SHKBP1-219ENST00000599575 EML1O00423 815 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 EVI5O60447 810 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 CD4P01730 458 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 SMIM10L2AP0DMW4 78 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 SMIM10L2BP0DMW5 78 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 XRCC6P12956 609 aaKnown RBP eCLIP18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 LONP1P36776 959 aaKnown RBP18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 TLE2Q04725 743 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 PLCB4Q15147 1175 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 PTPAQ15257 358 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 FAM47CQ5HY64 1035 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 ZNF484Q5JVG2 852 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 CKAP2LQ8IYA6 745 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 EXOC8Q8IYI6 725 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 USP28Q96RU2 1077 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 EIF2AK1Q9BQI3 630 aaKnown RBP18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 POLR3CQ9BUI4 534 aaPredicted RBP18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 RNPEPQ9H4A4 650 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 TRPC6Q9Y210 931 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 ZDHHC9Q9Y397 364 aa18.58■□□□□ 0.56
SHKBP1-219ENST00000599575 MKI67P46013 3256 aaKnown RBP18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 C17orf102A2RUQ5 167 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 PPP6R2O75170 966 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 CAPN15O75808 1086 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 OATP04181 439 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 RPA1P27694 616 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 PPFIA1Q13136 1202 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 TRIM60Q495X7 471 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 FAM173BQ6P4H8 233 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 OTUD6AQ7L8S5 288 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 KCNG4Q8TDN1 519 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 HDAC6Q9UBN7 1215 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 NOD1Q9Y239 953 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 ATP11BQ9Y2G3 1177 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 SRPRBQ9Y5M8 271 aaKnown RBP18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 CLIC4Q9Y696 253 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 DNAH12Q6ZR08 3092 aa18.57■□□□□ 0.56
SHKBP1-219ENST00000599575 POTEMA6NI47 508 aa18.56■□□□□ 0.56
SHKBP1-219ENST00000599575 PQBP1O60828 265 aaKnown RBP18.56■□□□□ 0.56
SHKBP1-219ENST00000599575 SLITRK3O94933 977 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms