RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 ADGRE1Q14246 886 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 PLCB4Q15147 1175 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 RAB30Q15771 203 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 GRIK4Q16099 956 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 FAM26DQ5JW98 314 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 CNKSR3Q6P9H4 555 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 ABHD15Q6UXT9 468 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 SPRED2Q7Z698 418 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 DAGLBQ8NCG7 672 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 CCDC148Q8NFR7 591 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 SDF4Q9BRK5 362 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 SMARCAD1Q9H4L7 1026 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 ERAP1Q9NZ08 941 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 PCDHA4Q9UN74 947 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 PCDHA11Q9Y5I1 949 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 RSPH10B2B2RC85 870 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 IPO5O00410 1097 aaKnown RBP13.82□□□□□ -0.2
LIG1-217ENST00000599165 PARNO95453 639 aaKnown RBP13.82□□□□□ -0.2
LIG1-217ENST00000599165 CHRNA1P02708 482 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 CTSHP09668 335 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 RSPH10BP0C881 870 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 ACTN1P12814 892 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 INSRRP14616 1297 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 PPFIA1Q13136 1202 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 ME3Q16798 604 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 PLEKHG4Q58EX7 1191 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 RPAINQ86UA6 219 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 HERC6Q8IVU3 1022 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 CCDC60Q8IWA6 550 aaPredicted RBP13.82□□□□□ -0.2
LIG1-217ENST00000599165 TRIM22Q8IYM9 498 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 DBF4BQ8NFT6 615 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 PHOSPHO2Q8TCD6 241 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 TRAPPC12Q8WVT3 735 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 GLG1Q92896 1179 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 SLC9A7Q96T83 725 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 KIF2CQ99661 725 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 KCNJ14Q9UNX9 436 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 STK36Q9NRP7 1315 aa13.82□□□□□ -0.2
LIG1-217ENST00000599165 PRRC2BQ5JSZ5 2229 aaKnown RBP13.82□□□□□ -0.2
LIG1-217ENST00000599165 COL4A4P53420 1690 aaPredicted RBP13.82□□□□□ -0.2
LIG1-217ENST00000599165 LCHNA4D1U4 455 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 ZBTB42B2RXF5 422 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 CPLX1O14810 134 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 MSH4O15457 936 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 CAND2O75155 1236 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 CA3P07451 260 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 ZNF76P36508 570 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 STAT5BP51692 787 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 NLRP5P59047 1200 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 PRR16Q569H4 304 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 MCTP2Q6DN12 878 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.81□□□□□ -0.2
LIG1-217ENST00000599165 PLPPR4Q7Z2D5 763 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 NECAB1Q8N987 351 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 BICD2Q8TD16 824 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 TBCKQ8TEA7 893 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 GJA10Q969M2 543 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 PHF20Q9BVI0 1012 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 SLKQ9H2G2 1235 aaPredicted RBP13.81□□□□□ -0.2
LIG1-217ENST00000599165 PRDM12Q9H4Q4 367 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 MSRAQ9UJ68 235 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 TUBE1Q9UJT0 475 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 COL4A6Q14031 1691 aa13.81□□□□□ -0.2
LIG1-217ENST00000599165 ABHD14A-ACY1A0A1B0GW23 586 aa13.8□□□□□ -0.2
LIG1-217ENST00000599165 EPOPA6NHQ4 379 aa13.8□□□□□ -0.2
LIG1-217ENST00000599165 TDP2O95551 362 aa13.8□□□□□ -0.2
LIG1-217ENST00000599165 GNAT1P11488 350 aa13.8□□□□□ -0.2
LIG1-217ENST00000599165 SETQ01105 290 aaPredicted RBP13.8□□□□□ -0.2
LIG1-217ENST00000599165 BLIDQ8IZY5 108 aa13.8□□□□□ -0.2
LIG1-217ENST00000599165 USP38Q8NB14 1042 aa13.8□□□□□ -0.2
LIG1-217ENST00000599165 OXER1Q8TDS5 423 aa13.8□□□□□ -0.2
LIG1-217ENST00000599165 GTF3C6Q969F1 213 aa13.8□□□□□ -0.2
LIG1-217ENST00000599165 MBOAT7Q96N66 472 aa13.8□□□□□ -0.2
LIG1-217ENST00000599165 ZNF577Q9BSK1 485 aa13.8□□□□□ -0.2
LIG1-217ENST00000599165 TRANK1O15050 2925 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 CYP3A7-CYP3A51PA0A087WV96 503 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.79□□□□□ -0.2
LIG1-217ENST00000599165 FOSL2P15408 326 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 CYP3A7P24462 503 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 USP11P51784 963 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 IGBP1P78318 339 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 TAP1Q03518 808 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 EARS2Q5JPH6 523 aaKnown RBP13.79□□□□□ -0.2
LIG1-217ENST00000599165 B3GNT9Q6UX72 402 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 FAM177A1Q8N128 213 aaPredicted RBP13.79□□□□□ -0.2
LIG1-217ENST00000599165 NSUN7Q8NE18 718 aaKnown RBP13.79□□□□□ -0.2
LIG1-217ENST00000599165 MAFAQ8NHW3 353 aaPredicted RBP13.79□□□□□ -0.2
LIG1-217ENST00000599165 DNAJB3Q8WWF6 145 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 SLC5A5Q92911 643 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 SLC28A3Q9HAS3 691 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 MAFBQ9Y5Q3 323 aaPredicted RBP13.79□□□□□ -0.2
LIG1-217ENST00000599165 TTC3P53804 2025 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 CUL9Q8IWT3 2517 aa13.79□□□□□ -0.2
LIG1-217ENST00000599165 POTEB3A0JP26 581 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 FAM205CA6NFA0 338 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 JAK2O60674 1132 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 GJB5O95377 273 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 NEK4P51957 841 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 LPIN1Q14693 890 aa13.78□□□□□ -0.2
LIG1-217ENST00000599165 Q4G0T1 1027 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms