RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 LRRC56Q8IYG6 542 aaPredicted RBP6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 TTLL6Q8N841 843 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 LINC00482Q8N8I6 264 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 KYQ8NBH2 561 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 TMEM209Q96SK2 561 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 KCNH7Q9NS40 1196 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 IFT57Q9NWB7 429 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 WASF3Q9UPY6 502 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 B3GALT1Q9Y5Z6 326 aa6.52□□□□□ -1.37
SMCHD1-204ENST00000581226 GSG1L2A8MUP6 293 aa6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 GAS7O60861 476 aa6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 CFPP27918 469 aa6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 DBPQ10586 325 aaPredicted RBP6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 TCERG1LQ5VWI1 586 aa6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 CILP2Q8IUL8 1156 aa6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 TMEM151BQ8IW70 566 aa6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 NXPE1Q8N323 547 aa6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 ZSCAN18Q8TBC5 510 aaPredicted RBP6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 LEO1Q8WVC0 666 aaPredicted RBP6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 DLG3Q92796 817 aa6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 ZSWIM3Q96MP5 696 aa6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 CLIC6Q96NY7 704 aa6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 ORAI3Q9BRQ5 295 aa6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 MAPRE3Q9UPY8 281 aa6.51□□□□□ -1.37
SMCHD1-204ENST00000581226 SBNO2Q9Y2G9 1366 aa6.5□□□□□ -1.37
SMCHD1-204ENST00000581226 H7C1D1 291 aa6.5□□□□□ -1.37
SMCHD1-204ENST00000581226 PFKPQ01813 784 aa6.5□□□□□ -1.37
SMCHD1-204ENST00000581226 ADAM9Q13443 819 aa6.5□□□□□ -1.37
SMCHD1-204ENST00000581226 VMACQ2NL98 169 aa6.5□□□□□ -1.37
SMCHD1-204ENST00000581226 SKOR2Q2VWA4 1001 aaPredicted RBP6.5□□□□□ -1.37
SMCHD1-204ENST00000581226 SAPCD2Q86UD0 394 aa6.5□□□□□ -1.37
SMCHD1-204ENST00000581226 KIF18BQ86Y91 864 aa6.5□□□□□ -1.37
SMCHD1-204ENST00000581226 THNSL2Q86YJ6 484 aa6.5□□□□□ -1.37
SMCHD1-204ENST00000581226 SLC39A2Q9NP94 309 aa6.5□□□□□ -1.37
SMCHD1-204ENST00000581226 ARHGAP28Q9P2N2 729 aa6.5□□□□□ -1.37
SMCHD1-204ENST00000581226 ZNF839A8K0R7 811 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 ZNF891A8MT65 544 aaPredicted RBP6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 F2P00734 622 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 SCNN1BP51168 640 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 KIF11P52732 1056 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 HERVK_113P62684 666 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 CAP1Q01518 475 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 SART3Q15020 963 aaKnown RBP6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 ZNF174Q15697 407 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 SEPT7Q16181 437 aaKnown RBP6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 TTLL7Q6ZT98 887 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 UBR7Q8N806 425 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 ZNF526Q8TF50 670 aaPredicted RBP6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 PCIF1Q9H4Z3 704 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 DLL4Q9NR61 685 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 SPATA6Q9NWH7 488 aaPredicted RBP6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 CROTQ9UKG9 612 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 PRKAB1Q9Y478 270 aa6.49□□□□□ -1.37
SMCHD1-204ENST00000581226 DVL2O14641 736 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 FFAR3O14843 346 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 FOXP2O15409 715 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 MMEP08473 750 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 SDHAP31040 664 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 THBS2P35442 1172 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 GLRBP48167 497 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 DSG1Q02413 1049 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 SKIDA1Q1XH10 827 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 VWA3BQ502W6 1294 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 PHF19Q5T6S3 580 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 CC2D1AQ6P1N0 951 aaPredicted RBP6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 DDX46Q7L014 1031 aaKnown RBP6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 RNF180Q86T96 592 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 ADGRG2Q8IZP9 1017 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 KIAA1958Q8N8K9 716 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 DTX3Q8N9I9 347 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 LINC01356Q8N9X3 169 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 OR2W6PQ8NHA6 318 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 IGDCC4Q8TDY8 1250 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 CHAC2Q8WUX2 184 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 KRTAP4-11Q9BYQ6 195 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 CAAP1Q9H8G2 361 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 OXSMQ9NWU1 459 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 THG1LQ9NWX6 298 aaKnown RBP6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 ARHGAP20Q9P2F6 1191 aa6.48□□□□□ -1.37
SMCHD1-204ENST00000581226 SH3D21A4FU49 640 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 CYP7B1O75881 506 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 ATP2A2P16615 1042 aaKnown RBP6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 SLC9A1P19634 815 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 AOAHP28039 575 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 SOX5P35711 763 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 STAT3P40763 770 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 DLX2Q07687 328 aaPredicted RBP6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 C1QL4Q86Z23 238 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 HIPK4Q8NE63 616 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 CHTF18Q8WVB6 975 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 ASB15Q8WXK1 588 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 GBP4Q96PP9 640 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 WRNIP1Q96S55 665 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 KRTAP4-5Q9BYR2 181 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 TMX1Q9H3N1 280 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 ACSS2Q9NR19 701 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 NTMQ9P121 344 aa6.47□□□□□ -1.37
SMCHD1-204ENST00000581226 SHROOM4Q9ULL8 1493 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms