RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 EPHX3Q9H6B9 360 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 CERS4Q9HA82 394 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 HCN4Q9Y3Q4 1203 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 MYH7BA7E2Y1 1941 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 MUC6Q6W4X9 2439 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 EPOPA6NHQ4 379 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 BTBD18B2RXH4 712 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 ACTN1P12814 892 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 SP2Q02086 613 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 SP4Q02446 784 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 LETM2Q2VYF4 491 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 PRR16Q569H4 304 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 FBXO18Q8NFZ0 1043 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 CYP2W1Q8TAV3 490 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 SLC9A7Q96T83 725 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 SENP7Q9BQF6 1050 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 SDF4Q9BRK5 362 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 TANC1Q9C0D5 1861 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 KCNH7Q9NS40 1196 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 FOXD4L1Q9NU39 408 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 TCEAL9Q9UHQ7 104 aa19.55■□□□□ 0.72
CLN3-217ENST00000565354 FAM86B1E9PN63 330 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 MEIS1O00470 390 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 TLL1O43897 1013 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 KPNA6O60684 536 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 MMP3P08254 477 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 FAM86B2P0C5J1 330 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 ARP10275 920 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 MYSM1Q5VVJ2 828 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 METTL7BQ6UX53 244 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 NEK8Q86SG6 692 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 PPTC7Q8NI37 304 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 PHOSPHO2Q8TCD6 241 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 CRYGNQ8WXF5 182 aa19.54■□□□□ 0.72
CLN3-217ENST00000565354 EMID1Q96A84 441 aaPredicted RBP19.54■□□□□ 0.72
CLN3-217ENST00000565354 NAP1L4Q99733 375 aaKnown RBP19.54■□□□□ 0.72
CLN3-217ENST00000565354 TRIP12Q14669 1992 aaPredicted RBP19.53■□□□□ 0.72
CLN3-217ENST00000565354 A6NJR5 290 aa19.53■□□□□ 0.72
CLN3-217ENST00000565354 KCNA2P16389 499 aa19.53■□□□□ 0.72
CLN3-217ENST00000565354 CIITAP33076 1130 aa19.53■□□□□ 0.72
CLN3-217ENST00000565354 RFC2P35250 354 aa19.53■□□□□ 0.72
CLN3-217ENST00000565354 PURAQ00577 322 aaKnown RBP19.53■□□□□ 0.72
CLN3-217ENST00000565354 TAP1Q03518 808 aa19.53■□□□□ 0.72
CLN3-217ENST00000565354 DGKDQ16760 1214 aa19.53■□□□□ 0.72
CLN3-217ENST00000565354 LARP1BQ659C4 914 aaKnown RBP19.53■□□□□ 0.72
CLN3-217ENST00000565354 MCTP1Q6DN14 999 aa19.53■□□□□ 0.72
CLN3-217ENST00000565354 ZNF577Q9BSK1 485 aa19.53■□□□□ 0.72
CLN3-217ENST00000565354 MTG1Q9BT17 334 aaPredicted RBP19.53■□□□□ 0.72
CLN3-217ENST00000565354 AGO4Q9HCK5 861 aaKnown RBP19.53■□□□□ 0.72
CLN3-217ENST00000565354 ATP9AO75110 1047 aa19.52■□□□□ 0.72
CLN3-217ENST00000565354 CHMP4BP1P59074 171 aa19.52■□□□□ 0.72
CLN3-217ENST00000565354 TMEM31Q5JXX7 168 aa19.52■□□□□ 0.72
CLN3-217ENST00000565354 ARNTL2Q8WYA1 636 aa19.52■□□□□ 0.72
CLN3-217ENST00000565354 HLA-CQ95604 372 aa19.52■□□□□ 0.72
CLN3-217ENST00000565354 INTS4Q96HW7 963 aaKnown RBP19.52■□□□□ 0.72
CLN3-217ENST00000565354 FOXP1Q9H334 677 aaPredicted RBP19.52■□□□□ 0.72
CLN3-217ENST00000565354 PTPRSQ13332 1948 aa19.52■□□□□ 0.72
CLN3-217ENST00000565354 IGLV3-22A0A075B6J6 115 aa19.51■□□□□ 0.71
CLN3-217ENST00000565354 DDX39AO00148 427 aaKnown RBP19.51■□□□□ 0.71
CLN3-217ENST00000565354 PITPNM1O00562 1244 aa19.51■□□□□ 0.71
CLN3-217ENST00000565354 MARCH6O60337 910 aa19.51■□□□□ 0.71
CLN3-217ENST00000565354 CCNT1O60563 726 aaKnown RBP19.51■□□□□ 0.71
CLN3-217ENST00000565354 ARHGEF15O94989 841 aa19.51■□□□□ 0.71
CLN3-217ENST00000565354 TDP2O95551 362 aa19.51■□□□□ 0.71
CLN3-217ENST00000565354 GCFC2P16383 781 aaKnown RBP19.51■□□□□ 0.71
CLN3-217ENST00000565354 HSDL1Q3SXM5 330 aa19.51■□□□□ 0.71
CLN3-217ENST00000565354 MOXD1Q6UVY6 613 aa19.51■□□□□ 0.71
CLN3-217ENST00000565354 HERC6Q8IVU3 1022 aa19.51■□□□□ 0.71
CLN3-217ENST00000565354 TNFRSF25Q93038 417 aa19.51■□□□□ 0.71
CLN3-217ENST00000565354 UIMC1Q96RL1 719 aa19.51■□□□□ 0.71
CLN3-217ENST00000565354 JPH1Q9HDC5 661 aaPredicted RBP19.51■□□□□ 0.71
CLN3-217ENST00000565354 SLC9A2Q9UBY0 812 aa19.51■□□□□ 0.71
CLN3-217ENST00000565354 DDX25Q9UHL0 483 aaKnown RBP19.51■□□□□ 0.71
CLN3-217ENST00000565354 COL4A4P53420 1690 aaPredicted RBP19.51■□□□□ 0.71
CLN3-217ENST00000565354 NFASCO94856 1347 aa19.51■□□□□ 0.71
CLN3-217ENST00000565354 DOCK5Q9H7D0 1870 aa19.5■□□□□ 0.71
CLN3-217ENST00000565354 FAM205CA6NFA0 338 aa19.5■□□□□ 0.71
CLN3-217ENST00000565354 KIF28PB7ZC32 967 aa19.5■□□□□ 0.71
CLN3-217ENST00000565354 IPO5O00410 1097 aaKnown RBP19.5■□□□□ 0.71
CLN3-217ENST00000565354 ATP2B1P20020 1258 aa19.5■□□□□ 0.71
CLN3-217ENST00000565354 PDCP20941 246 aa19.5■□□□□ 0.71
CLN3-217ENST00000565354 NBPF20Q3BBV1 942 aa19.5■□□□□ 0.71
CLN3-217ENST00000565354 Q4G0T1 1027 aa19.5■□□□□ 0.71
CLN3-217ENST00000565354 FAM47CQ5HY64 1035 aa19.5■□□□□ 0.71
CLN3-217ENST00000565354 EARS2Q5JPH6 523 aaKnown RBP19.5■□□□□ 0.71
CLN3-217ENST00000565354 KATNAL1Q9BW62 490 aa19.5■□□□□ 0.71
CLN3-217ENST00000565354 BCAS3Q9H6U6 928 aa19.5■□□□□ 0.71
CLN3-217ENST00000565354 TBC1D22BQ9NU19 505 aa19.5■□□□□ 0.71
CLN3-217ENST00000565354 NOL7Q9UMY1 257 aaKnown RBP19.5■□□□□ 0.71
CLN3-217ENST00000565354 GPR37L1O60883 481 aa19.49■□□□□ 0.71
CLN3-217ENST00000565354 PPFIA4O75335 1185 aa19.49■□□□□ 0.71
CLN3-217ENST00000565354 IQCF3P0C7M6 154 aa19.49■□□□□ 0.71
CLN3-217ENST00000565354 GRB10Q13322 594 aa19.49■□□□□ 0.71
CLN3-217ENST00000565354 UTP14CQ5TAP6 766 aaKnown RBP19.49■□□□□ 0.71
CLN3-217ENST00000565354 NFRKBQ6P4R8 1299 aa19.49■□□□□ 0.71
CLN3-217ENST00000565354 RETREG2Q8NC44 543 aa19.49■□□□□ 0.71
CLN3-217ENST00000565354 GPR20Q99678 358 aa19.49■□□□□ 0.71
CLN3-217ENST00000565354 FTOQ9C0B1 505 aaKnown RBP eCLIP19.49■□□□□ 0.71
CLN3-217ENST00000565354 CYP3A7-CYP3A51PA0A087WV96 503 aa19.48■□□□□ 0.71
CLN3-217ENST00000565354 VPS37CA5D8V6 355 aaPredicted RBP19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms