RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 C11orf49Q9H6J7 331 aa13.69□□□□□ -0.22
DDX55-210ENST00000543016 STARD7Q9NQZ5 370 aa13.69□□□□□ -0.22
DDX55-210ENST00000543016 ZNF302Q9NR11 478 aa13.69□□□□□ -0.22
DDX55-210ENST00000543016 RCOR1Q9UKL0 485 aa13.69□□□□□ -0.22
DDX55-210ENST00000543016 SRPRBQ9Y5M8 271 aaKnown RBP13.69□□□□□ -0.22
DDX55-210ENST00000543016 MAFBQ9Y5Q3 323 aaPredicted RBP13.69□□□□□ -0.22
DDX55-210ENST00000543016 HTTP42858 3142 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 A0A0U1RQG5 324 aaPredicted RBP13.68□□□□□ -0.22
DDX55-210ENST00000543016 A0A1W2PQ45 241 aaPredicted RBP13.68□□□□□ -0.22
DDX55-210ENST00000543016 A0A1W2PQY0 241 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 HAS3O00219 553 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 SPTLC2O15270 562 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 CHMP2AO43633 222 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 SORBS3O60504 671 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 EN2P19622 333 aaPredicted RBP13.68□□□□□ -0.22
DDX55-210ENST00000543016 PTGS1P23219 599 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 QARSP47897 775 aaKnown RBP13.68□□□□□ -0.22
DDX55-210ENST00000543016 MNX1P50219 401 aaPredicted RBP13.68□□□□□ -0.22
DDX55-210ENST00000543016 PSMC5P62195 406 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 DNM1Q05193 864 aaKnown RBP13.68□□□□□ -0.22
DDX55-210ENST00000543016 UTP14CQ5TAP6 766 aaKnown RBP13.68□□□□□ -0.22
DDX55-210ENST00000543016 NCAPH2Q6IBW4 605 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 SWSAP1Q6NVH7 229 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 PDXDC2PQ6P474 469 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 NFRKBQ6P4R8 1299 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 UBE2Q1Q7Z7E8 422 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 SESTD1Q86VW0 696 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 KRI1Q8N9T8 703 aaKnown RBP13.68□□□□□ -0.22
DDX55-210ENST00000543016 GJA10Q969M2 543 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 HSD17B14Q9BPX1 270 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 POLR3CQ9BUI4 534 aaPredicted RBP13.68□□□□□ -0.22
DDX55-210ENST00000543016 ZSWIM4Q9H7M6 989 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 TUFT1Q9NNX1 390 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 TFIP11Q9UBB9 837 aaKnown RBP13.68□□□□□ -0.22
DDX55-210ENST00000543016 LRWD1Q9UFC0 647 aa13.68□□□□□ -0.22
DDX55-210ENST00000543016 MROH7Q68CQ1 1323 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 LYPLA2O95372 231 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 GNAT1P11488 350 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 XRCC6P12956 609 aaKnown RBP eCLIP13.67□□□□□ -0.22
DDX55-210ENST00000543016 RPA1P27694 616 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 PSEN2P49810 448 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 CEBPZQ03701 1054 aaKnown RBP13.67□□□□□ -0.22
DDX55-210ENST00000543016 MFSD10Q14728 455 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 CSPP1Q1MSJ5 1256 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 KRT79Q5XKE5 535 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 C4orf19Q8IY42 314 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 ZNF579Q8NAF0 562 aaKnown RBP13.67□□□□□ -0.22
DDX55-210ENST00000543016 SLC43A3Q8NBI5 491 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 BBXQ8WY36 941 aaPredicted RBP13.67□□□□□ -0.22
DDX55-210ENST00000543016 KAT2BQ92831 832 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 VTI1AQ96AJ9 217 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 PAWRQ96IZ0 340 aaKnown RBP13.67□□□□□ -0.22
DDX55-210ENST00000543016 UIMC1Q96RL1 719 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 PCYT2Q99447 389 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 SENP6Q9GZR1 1112 aaPredicted RBP13.67□□□□□ -0.22
DDX55-210ENST00000543016 NRBP2Q9NSY0 501 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 GABBR1Q9UBS5 961 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 PPME1Q9Y570 386 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 FRMPD3Q5JV73 1810 aa13.67□□□□□ -0.22
DDX55-210ENST00000543016 IGSF9BQ9UPX0 1349 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 VWA3AA6NCI4 1184 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 RRN3P2A6NIE6 340 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 EML1O00423 815 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 HBP1O60381 514 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 ZNF286BP0CG31 522 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 IRX5P78411 483 aaPredicted RBP13.66□□□□□ -0.22
DDX55-210ENST00000543016 ITGA7Q13683 1181 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 SNX17Q15036 470 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 KIAA0753Q2KHM9 967 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 XKR3Q5GH77 459 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 CCDC60Q8IWA6 550 aaPredicted RBP13.66□□□□□ -0.22
DDX55-210ENST00000543016 C7orf31Q8N865 590 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 ATP8B4Q8TF62 1192 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 TOX2Q96NM4 488 aa13.66□□□□□ -0.22
DDX55-210ENST00000543016 EIF2AK1Q9BQI3 630 aaKnown RBP13.66□□□□□ -0.22
DDX55-210ENST00000543016 FBXO2Q9UK22 296 aaPredicted RBP13.66□□□□□ -0.22
DDX55-210ENST00000543016 NRCAMQ92823 1304 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 KDM3AQ9Y4C1 1321 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 POTEB3A0JP26 581 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 POTEMA6NI47 508 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 ARVCFO00192 962 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 CUTAO60888 179 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 SLITRK3O94933 977 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 RPLP2P05387 115 aaKnown RBP13.65□□□□□ -0.22
DDX55-210ENST00000543016 NCLP19338 710 aaKnown RBP13.65□□□□□ -0.22
DDX55-210ENST00000543016 MARCKSP29966 332 aaPredicted RBP13.65□□□□□ -0.22
DDX55-210ENST00000543016 TXLNAP40222 546 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 UBA7P41226 1012 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 IL17AQ16552 155 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 NBPF20Q3BBV1 942 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 ZNF484Q5JVG2 852 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 POTEBQ6S5H4 581 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 SLC39A5Q6ZMH5 540 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 OTUD6AQ7L8S5 288 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 EXOC8Q8IYI6 725 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 LEO1Q8WVC0 666 aaPredicted RBP13.65□□□□□ -0.22
DDX55-210ENST00000543016 SPATA32Q96LK8 384 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 HTATIP2Q9BUP3 242 aa13.65□□□□□ -0.22
DDX55-210ENST00000543016 FTOQ9C0B1 505 aaKnown RBP eCLIP13.65□□□□□ -0.22
DDX55-210ENST00000543016 NT5C3AQ9H0P0 336 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms