RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 TUFT1Q9NNX1 390 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 BLOC1S4Q9NUP1 217 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 LRWD1Q9UFC0 647 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 FAM184BQ9ULE4 1060 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 MAFBQ9Y5Q3 323 aaPredicted RBP11.86□□□□□ -0.51
VPS33A-204ENST00000540669 KDM3AQ9Y4C1 1321 aa11.86□□□□□ -0.51
VPS33A-204ENST00000540669 ACTN4O43707 911 aaKnown RBP11.85□□□□□ -0.51
VPS33A-204ENST00000540669 SLITRK3O94933 977 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 F2P00734 622 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 MMP3P08254 477 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 LIG1P18858 919 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 CDC25AP30304 524 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 HOXC8P31273 242 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 FAM160A1Q05DH4 1040 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 HAUS3Q68CZ6 603 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 PDXDC2PQ6P474 469 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 KCNK18Q7Z418 384 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 SH3RF1Q7Z6J0 888 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 TLK2Q86UE8 772 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 CATSPER3Q86XQ3 398 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 KLHDC9Q8NEP7 349 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 ZNF333Q96JL9 665 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 CEP89Q96ST8 783 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 EIF2AK1Q9BQI3 630 aaKnown RBP11.85□□□□□ -0.51
VPS33A-204ENST00000540669 DISC1Q9NRI5 854 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 PKD2L1Q9P0L9 805 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 PCDHA10Q9Y5I2 948 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 STK24Q9Y6E0 443 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 SIP14410 1827 aa11.85□□□□□ -0.51
VPS33A-204ENST00000540669 POTEB3A0JP26 581 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 HAS3O00219 553 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 MSCO60682 206 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 PRPF40AO75400 957 aaKnown RBP11.84□□□□□ -0.51
VPS33A-204ENST00000540669 CAPN2P17655 700 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 ATP4AP20648 1035 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 NDUFA8P51970 172 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 NFKBIBQ15653 356 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 SPECC1Q5M775 1068 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 NCAPH2Q6IBW4 605 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 POTEBQ6S5H4 581 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 MIER3Q7Z3K6 550 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 CABP7Q86V35 215 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 C4orf19Q8IY42 314 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 ELOA2Q8IYF1 753 aaPredicted RBP11.84□□□□□ -0.51
VPS33A-204ENST00000540669 FSIP1Q8NA03 581 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 SNX29Q8TEQ0 813 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 UIMC1Q96RL1 719 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 MTRQ99707 1265 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 LXNQ9BS40 222 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 C16orf70Q9BSU1 422 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 STK17AQ9UEE5 414 aa11.84□□□□□ -0.51
VPS33A-204ENST00000540669 DDX20Q9UHI6 824 aaKnown RBP11.84□□□□□ -0.51
VPS33A-204ENST00000540669 A0A1B0GVL5 298 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 MYADML2A6NDP7 307 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 DDX39AO00148 427 aaKnown RBP11.83□□□□□ -0.52
VPS33A-204ENST00000540669 MBD3O95983 291 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 LGALS2P05162 132 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 P4HBP07237 508 aaKnown RBP11.83□□□□□ -0.52
VPS33A-204ENST00000540669 PLCG1P19174 1290 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 TCF7P36402 384 aaPredicted RBP11.83□□□□□ -0.52
VPS33A-204ENST00000540669 KARSQ15046 597 aaKnown RBP11.83□□□□□ -0.52
VPS33A-204ENST00000540669 CNNM4Q6P4Q7 775 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 POTEGQ6S5H5 508 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 RBM43Q6ZSC3 357 aaKnown RBP11.83□□□□□ -0.52
VPS33A-204ENST00000540669 PLPPR4Q7Z2D5 763 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 DHX37Q8IY37 1157 aaKnown RBP11.83□□□□□ -0.52
VPS33A-204ENST00000540669 SH3TC2Q8TF17 1288 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 AFG1LQ8WV93 481 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 SEPT1Q8WYJ6 367 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 KAT2BQ92831 832 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 DYDC2Q96IM9 177 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 TIGD1Q96MW7 591 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 SPATA33Q96N06 139 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 CRISPLD2Q9H0B8 497 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.83□□□□□ -0.52
VPS33A-204ENST00000540669 CUEDC2Q9H467 287 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 RGL1Q9NZL6 768 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 KCNH3Q9ULD8 1083 aa11.83□□□□□ -0.52
VPS33A-204ENST00000540669 KIAA0100Q14667 2235 aaKnown RBP11.82□□□□□ -0.52
VPS33A-204ENST00000540669 ZBTB42B2RXF5 422 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 GOLGA6L22H0YM25 854 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 CHMP2AO43633 222 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 PPFIA4O75335 1185 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 NR1I2O75469 434 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 PSAPP07602 524 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 PTMSP20962 102 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 UBA7P41226 1012 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 QARSP47897 775 aaKnown RBP11.82□□□□□ -0.52
VPS33A-204ENST00000540669 SLC26A2P50443 739 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 PSMC5P62195 406 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 IRX5P78411 483 aaPredicted RBP11.82□□□□□ -0.52
VPS33A-204ENST00000540669 TARBP2Q15633 366 aaKnown RBP11.82□□□□□ -0.52
VPS33A-204ENST00000540669 KLHL40Q2TBA0 621 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 KRT79Q5XKE5 535 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 MIS18BP1Q6P0N0 1132 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 TRIM50Q86XT4 487 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 OR6J1Q8NGC5 347 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 ERMNQ8TAM6 284 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 NT5C3AQ9H0P0 336 aa11.82□□□□□ -0.52
VPS33A-204ENST00000540669 ZSWIM4Q9H7M6 989 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms