RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 SEPT1Q8WYJ6 367 aa8.08□□□□□ -1.12
NUP54-204ENST00000506098 COPS5Q92905 334 aa8.08□□□□□ -1.12
NUP54-204ENST00000506098 CALML4Q96GE6 196 aa8.08□□□□□ -1.12
NUP54-204ENST00000506098 PNMA5Q96PV4 448 aa8.08□□□□□ -1.12
NUP54-204ENST00000506098 NT5C3AQ9H0P0 336 aa8.08□□□□□ -1.12
NUP54-204ENST00000506098 CUEDC2Q9H467 287 aa8.08□□□□□ -1.12
NUP54-204ENST00000506098 PKD2L1Q9P0L9 805 aa8.08□□□□□ -1.12
NUP54-204ENST00000506098 TCEAL9Q9UHQ7 104 aa8.08□□□□□ -1.12
NUP54-204ENST00000506098 ZHX1Q9UKY1 873 aaPredicted RBP8.08□□□□□ -1.12
NUP54-204ENST00000506098 FAM184BQ9ULE4 1060 aa8.08□□□□□ -1.12
NUP54-204ENST00000506098 PTPN22Q9Y2R2 807 aa8.08□□□□□ -1.12
NUP54-204ENST00000506098 TRIM17Q9Y577 477 aa8.08□□□□□ -1.12
NUP54-204ENST00000506098 EMSYQ7Z589 1322 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 IGSF9BQ9UPX0 1349 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 CITO14578 2027 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 DDX39AO00148 427 aaKnown RBP8.07□□□□□ -1.12
NUP54-204ENST00000506098 POLR2DO15514 142 aaKnown RBP8.07□□□□□ -1.12
NUP54-204ENST00000506098 SEPT4O43236 478 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 DKC1O60832 514 aaKnown RBP eCLIP8.07□□□□□ -1.12
NUP54-204ENST00000506098 DUSP11O75319 330 aaKnown RBP8.07□□□□□ -1.12
NUP54-204ENST00000506098 LGR5O75473 907 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 PSAPP07602 524 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 SUPT20HL2P0C7V6 817 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 HSPA1AP0DMV8 641 aaKnown RBP8.07□□□□□ -1.12
NUP54-204ENST00000506098 HSPA1BP0DMV9 641 aaKnown RBP8.07□□□□□ -1.12
NUP54-204ENST00000506098 XRCC6P12956 609 aaKnown RBP eCLIP8.07□□□□□ -1.12
NUP54-204ENST00000506098 AKR1A1P14550 325 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 ELNP15502 786 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 PLCG1P19174 1290 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 GRK4P32298 578 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 CCT6AP40227 531 aaKnown RBP8.07□□□□□ -1.12
NUP54-204ENST00000506098 TRIM32Q13049 653 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 KARSQ15046 597 aaKnown RBP8.07□□□□□ -1.12
NUP54-204ENST00000506098 HSDL1Q3SXM5 330 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 TPRNQ4KMQ1 711 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 NAALADL2Q58DX5 795 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 MIS18BP1Q6P0N0 1132 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 C4orf19Q8IY42 314 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 IQUBQ8NA54 791 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 PPTC7Q8NI37 304 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 AFAP1L1Q8TED9 768 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 LRRC15Q8TF66 581 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 DYDC2Q96IM9 177 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 GPR20Q99678 358 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 UPF3AQ9H1J1 476 aaKnown RBP8.07□□□□□ -1.12
NUP54-204ENST00000506098 MLXIPQ9HAP2 919 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 BLOC1S4Q9NUP1 217 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 DDX19AQ9NUU7 478 aaKnown RBP8.07□□□□□ -1.12
NUP54-204ENST00000506098 DACT1Q9NYF0 836 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 STK17AQ9UEE5 414 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 TELO2Q9Y4R8 837 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 MAFBQ9Y5Q3 323 aaPredicted RBP8.07□□□□□ -1.12
NUP54-204ENST00000506098 PTCH2Q9Y6C5 1203 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 ALPK3Q96L96 1907 aa8.07□□□□□ -1.12
NUP54-204ENST00000506098 ANK1P16157 1881 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 POTEB3A0JP26 581 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 A6NJR5 290 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 CHMP2AO43633 222 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 ACTN4O43707 911 aaKnown RBP8.06□□□□□ -1.12
NUP54-204ENST00000506098 TRAK2O60296 914 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 PPFIA4O75335 1185 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 STBD1O95210 358 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 SLFN14P0C7P3 912 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 PRKAR2AP13861 404 aaKnown RBP8.06□□□□□ -1.12
NUP54-204ENST00000506098 TCF7P36402 384 aaPredicted RBP8.06□□□□□ -1.12
NUP54-204ENST00000506098 QARSP47897 775 aaKnown RBP8.06□□□□□ -1.12
NUP54-204ENST00000506098 SLC26A2P50443 739 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 GJA9P57773 515 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 PSMC5P62195 406 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 MDM2Q00987 491 aaPredicted RBP8.06□□□□□ -1.12
NUP54-204ENST00000506098 PKN2Q16513 984 aaKnown RBP8.06□□□□□ -1.12
NUP54-204ENST00000506098 LONRF3Q496Y0 759 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 GJC2Q5T442 439 aaPredicted RBP8.06□□□□□ -1.12
NUP54-204ENST00000506098 RRAGBQ5VZM2 374 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 KANK3Q6NY19 840 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 PDXDC2PQ6P474 469 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 POTEBQ6S5H4 581 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 KRBA2Q6ZNG9 492 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 PLPPR4Q7Z2D5 763 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 SH3RF1Q7Z6J0 888 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 CTU1Q7Z7A3 348 aaKnown RBP8.06□□□□□ -1.12
NUP54-204ENST00000506098 CCDC60Q8IWA6 550 aaPredicted RBP8.06□□□□□ -1.12
NUP54-204ENST00000506098 PDILTQ8N807 584 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 OR6J1Q8NGC5 347 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 SPATA33Q96N06 139 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 NACC1Q96RE7 527 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 PCYT2Q99447 389 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 LXNQ9BS40 222 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 ZSWIM4Q9H7M6 989 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 MAGEF1Q9HAY2 307 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 KBTBD4Q9NVX7 518 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 RGL1Q9NZL6 768 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 WRAP73Q9P2S5 460 aaPredicted RBP8.06□□□□□ -1.12
NUP54-204ENST00000506098 SERTAD1Q9UHV2 236 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 KIAA1024Q9UPX6 916 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 SAMM50Q9Y512 469 aa8.06□□□□□ -1.12
NUP54-204ENST00000506098 PDCD11Q14690 1871 aaKnown RBP8.05□□□□□ -1.12
NUP54-204ENST00000506098 NOP56O00567 594 aaKnown RBP8.05□□□□□ -1.12
NUP54-204ENST00000506098 CTAGE5O15320 804 aa8.05□□□□□ -1.12
NUP54-204ENST00000506098 DYNC1LI2O43237 492 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms