RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 TDP2O95551 362 aa18.5■□□□□ 0.55
SF3A1-209ENST00000496189 RPLP2P05387 115 aaKnown RBP18.5■□□□□ 0.55
SF3A1-209ENST00000496189 SFNP31947 248 aa18.5■□□□□ 0.55
SF3A1-209ENST00000496189 FXR1P51114 621 aaKnown RBP eCLIP18.5■□□□□ 0.55
SF3A1-209ENST00000496189 JAK3P52333 1124 aa18.5■□□□□ 0.55
SF3A1-209ENST00000496189 PDXDC2PQ6P474 469 aa18.5■□□□□ 0.55
SF3A1-209ENST00000496189 LRRC8DQ7L1W4 858 aa18.5■□□□□ 0.55
SF3A1-209ENST00000496189 SERINC5Q86VE9 423 aa18.5■□□□□ 0.55
SF3A1-209ENST00000496189 HSCBQ8IWL3 235 aa18.5■□□□□ 0.55
SF3A1-209ENST00000496189 OXER1Q8TDS5 423 aa18.5■□□□□ 0.55
SF3A1-209ENST00000496189 UIMC1Q96RL1 719 aa18.5■□□□□ 0.55
SF3A1-209ENST00000496189 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.5■□□□□ 0.55
SF3A1-209ENST00000496189 FTOQ9C0B1 505 aaKnown RBP eCLIP18.5■□□□□ 0.55
SF3A1-209ENST00000496189 WNT8AQ9H1J5 351 aa18.5■□□□□ 0.55
SF3A1-209ENST00000496189 SMC3Q9UQE7 1217 aa18.5■□□□□ 0.55
SF3A1-209ENST00000496189 TRIOBPQ9H2D6 2365 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 K7ELQ4 463 aaPredicted RBP18.49■□□□□ 0.55
SF3A1-209ENST00000496189 DHX15O43143 795 aaKnown RBP18.49■□□□□ 0.55
SF3A1-209ENST00000496189 IQCF3P0C7M6 154 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 ACRP10323 421 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 THPOP40225 353 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 ZNF200P98182 395 aaPredicted RBP18.49■□□□□ 0.55
SF3A1-209ENST00000496189 RBL2Q08999 1139 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 NR5A1Q13285 461 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 GRIK4Q16099 956 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 C9orf50Q5SZB4 431 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 PPP4R3AQ6IN85 833 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 SWSAP1Q6NVH7 229 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 ABHD15Q6UXT9 468 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 ZNF365Q70YC5 407 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 DEFB128Q7Z7B8 93 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 LMBR1Q8WVP7 490 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 SLC5A5Q92911 643 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 LENG9Q96B70 501 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 TUBE1Q9UJT0 475 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 TELO2Q9Y4R8 837 aa18.49■□□□□ 0.55
SF3A1-209ENST00000496189 POTEB3A0JP26 581 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 ZBBXA8MT70 800 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 BTBD18B2RXH4 712 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 TREHO43280 583 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 CHMP2AO43633 222 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 CCNE2O96020 404 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 CKBP12277 381 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 HOXC8P31273 242 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 EPHB4P54760 987 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 IGBP1P78318 339 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 GUCY1B3Q02153 619 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 TMEM240Q5SV17 173 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 TAF2Q6P1X5 1199 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 POTEBQ6S5H4 581 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 MIER3Q7Z3K6 550 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 RDM1Q8NG50 284 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 FAM167AQ96KS9 214 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 FAM20AQ96MK3 541 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 DISC1Q9NRI5 854 aa18.48■□□□□ 0.55
SF3A1-209ENST00000496189 TBX3O15119 743 aa18.47■□□□□ 0.55
SF3A1-209ENST00000496189 HBP1O60381 514 aa18.47■□□□□ 0.55
SF3A1-209ENST00000496189 CUL4AQ13619 759 aa18.47■□□□□ 0.55
SF3A1-209ENST00000496189 CCDC60Q8IWA6 550 aaPredicted RBP18.47■□□□□ 0.55
SF3A1-209ENST00000496189 SLFN12Q8IYM2 578 aa18.47■□□□□ 0.55
SF3A1-209ENST00000496189 DHX38Q92620 1227 aaKnown RBP18.47■□□□□ 0.55
SF3A1-209ENST00000496189 MBOAT7Q96N66 472 aa18.47■□□□□ 0.55
SF3A1-209ENST00000496189 TANC1Q9C0D5 1861 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 KAT6AQ92794 2004 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 IGKV6D-21A0A0A0MT36 114 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 RSPH10B2B2RC85 870 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 M0QZ92 97 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 RSPH10BP0C881 870 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 INSRRP14616 1297 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 GJB2P29033 226 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 PLCB4Q15147 1175 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 GPR153Q6NV75 609 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 OTOP2Q7RTS6 562 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 FBXO18Q8NFZ0 1043 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 ATP8B4Q8TF62 1192 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 BBXQ8WY36 941 aaPredicted RBP18.46■□□□□ 0.55
SF3A1-209ENST00000496189 HERVK_113Q902F9 699 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 INTS4Q96HW7 963 aaKnown RBP18.46■□□□□ 0.55
SF3A1-209ENST00000496189 CTAGE1Q96RT6 745 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 PCYT2Q99447 389 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 FOXP1Q9H334 677 aaPredicted RBP18.46■□□□□ 0.55
SF3A1-209ENST00000496189 GABBR1Q9UBS5 961 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 CEP131Q9UPN4 1083 aa18.46■□□□□ 0.55
SF3A1-209ENST00000496189 COL1A2P08123 1366 aa18.45■□□□□ 0.54
SF3A1-209ENST00000496189 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.45■□□□□ 0.54
SF3A1-209ENST00000496189 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.45■□□□□ 0.54
SF3A1-209ENST00000496189 PSMD10O75832 226 aa18.45■□□□□ 0.54
SF3A1-209ENST00000496189 ZNF484Q5JVG2 852 aa18.45■□□□□ 0.54
SF3A1-209ENST00000496189 ZNF618Q5T7W0 954 aa18.45■□□□□ 0.54
SF3A1-209ENST00000496189 ETNPPLQ8TBG4 499 aa18.45■□□□□ 0.54
SF3A1-209ENST00000496189 NRBP2Q9NSY0 501 aa18.45■□□□□ 0.54
SF3A1-209ENST00000496189 NOL7Q9UMY1 257 aaKnown RBP18.45■□□□□ 0.54
SF3A1-209ENST00000496189 SLC4A7Q9Y6M7 1214 aa18.45■□□□□ 0.54
SF3A1-209ENST00000496189 H3BQV1 296 aa18.44■□□□□ 0.54
SF3A1-209ENST00000496189 SLC37A4O43826 429 aa18.44■□□□□ 0.54
SF3A1-209ENST00000496189 DKC1O60832 514 aaKnown RBP eCLIP18.44■□□□□ 0.54
SF3A1-209ENST00000496189 HSP90AA1P07900 732 aaKnown RBP18.44■□□□□ 0.54
SF3A1-209ENST00000496189 KCNJ6P48051 423 aa18.44■□□□□ 0.54
SF3A1-209ENST00000496189 SMAD3P84022 425 aaKnown RBP18.44■□□□□ 0.54
SF3A1-209ENST00000496189 HIC1Q14526 733 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms