RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 PCYT2Q99447 389 aa18.02■□□□□ 0.48
LIME1-209ENST00000494776 RIT2Q99578 217 aa18.02■□□□□ 0.48
LIME1-209ENST00000494776 IL23AQ9NPF7 189 aa18.02■□□□□ 0.48
LIME1-209ENST00000494776 ZNF302Q9NR11 478 aa18.02■□□□□ 0.48
LIME1-209ENST00000494776 PCDHA10Q9Y5I2 948 aa18.02■□□□□ 0.48
LIME1-209ENST00000494776 WDR64B1ANS9 1081 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 TREHO43280 583 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 IGBP1P78318 339 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 HIC1Q14526 733 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 EARS2Q5JPH6 523 aaKnown RBP18.01■□□□□ 0.47
LIME1-209ENST00000494776 PPP4R3AQ6IN85 833 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 PDXDC2PQ6P474 469 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 PSRC1Q6PGN9 363 aaPredicted RBP18.01■□□□□ 0.47
LIME1-209ENST00000494776 DEFB128Q7Z7B8 93 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 CKAP2LQ8IYA6 745 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 AFAP1L1Q8TED9 768 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 LMBR1Q8WVP7 490 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 GJA10Q969M2 543 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 MBOAT7Q96N66 472 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 CTAGE1Q96RT6 745 aa18.01■□□□□ 0.47
LIME1-209ENST00000494776 POTEB3A0JP26 581 aa18■□□□□ 0.47
LIME1-209ENST00000494776 FAM205CA6NFA0 338 aa18■□□□□ 0.47
LIME1-209ENST00000494776 SLC37A4O43826 429 aa18■□□□□ 0.47
LIME1-209ENST00000494776 FGBP02675 491 aa18■□□□□ 0.47
LIME1-209ENST00000494776 IQCF3P0C7M6 154 aa18■□□□□ 0.47
LIME1-209ENST00000494776 CKBP12277 381 aa18■□□□□ 0.47
LIME1-209ENST00000494776 SELPP16109 830 aa18■□□□□ 0.47
LIME1-209ENST00000494776 RFC2P35250 354 aa18■□□□□ 0.47
LIME1-209ENST00000494776 THPOP40225 353 aa18■□□□□ 0.47
LIME1-209ENST00000494776 SLC26A2P50443 739 aa18■□□□□ 0.47
LIME1-209ENST00000494776 PLCB4Q15147 1175 aa18■□□□□ 0.47
LIME1-209ENST00000494776 GRIK4Q16099 956 aa18■□□□□ 0.47
LIME1-209ENST00000494776 POTEBQ6S5H4 581 aa18■□□□□ 0.47
LIME1-209ENST00000494776 LRRC8DQ7L1W4 858 aa18■□□□□ 0.47
LIME1-209ENST00000494776 SERINC5Q86VE9 423 aa18■□□□□ 0.47
LIME1-209ENST00000494776 FBXO18Q8NFZ0 1043 aa18■□□□□ 0.47
LIME1-209ENST00000494776 DHX38Q92620 1227 aaKnown RBP18■□□□□ 0.47
LIME1-209ENST00000494776 TNFRSF25Q93038 417 aa18■□□□□ 0.47
LIME1-209ENST00000494776 BUD13Q9BRD0 619 aaKnown RBP eCLIP18■□□□□ 0.471e-15■□□□□ 10.1
LIME1-209ENST00000494776 FTOQ9C0B1 505 aaKnown RBP eCLIP18■□□□□ 0.472e-7■□□□□ 8.6
LIME1-209ENST00000494776 DISC1Q9NRI5 854 aa18■□□□□ 0.47
LIME1-209ENST00000494776 ZSCAN21Q9Y5A6 473 aaPredicted RBP18■□□□□ 0.47
LIME1-209ENST00000494776 IGKV6D-21A0A0A0MT36 114 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 RRN3P2A6NIE6 340 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 PSMD10O75832 226 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 BAG4O95429 457 aaKnown RBP17.99■□□□□ 0.47
LIME1-209ENST00000494776 INSRRP14616 1297 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 HOXC8P31273 242 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 SFNP31947 248 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 JAK3P52333 1124 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 LRIT3Q3SXY7 679 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 TMEM240Q5SV17 173 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 ZNF365Q70YC5 407 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 TRMT1LQ7Z2T5 733 aaKnown RBP17.99■□□□□ 0.47
LIME1-209ENST00000494776 CCDC60Q8IWA6 550 aaPredicted RBP17.99■□□□□ 0.47
LIME1-209ENST00000494776 ETNPPLQ8TBG4 499 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 FAM20AQ96MK3 541 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 MTIF3Q9H2K0 278 aaKnown RBP17.99■□□□□ 0.47
LIME1-209ENST00000494776 UNC45AQ9H3U1 944 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 GABBR1Q9UBS5 961 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 SMC3Q9UQE7 1217 aa17.99■□□□□ 0.47
LIME1-209ENST00000494776 RANBP2P49792 3224 aaKnown RBP17.98■□□□□ 0.47
LIME1-209ENST00000494776 PARNO95453 639 aaKnown RBP17.98■□□□□ 0.47
LIME1-209ENST00000494776 PFKMP08237 780 aa17.98■□□□□ 0.47
LIME1-209ENST00000494776 ATP2B1P20020 1258 aa17.98■□□□□ 0.47
LIME1-209ENST00000494776 GJB2P29033 226 aa17.98■□□□□ 0.47
LIME1-209ENST00000494776 ZNF618Q5T7W0 954 aa17.98■□□□□ 0.47
LIME1-209ENST00000494776 C16orf59Q7L2K0 433 aa17.98■□□□□ 0.47
LIME1-209ENST00000494776 MIER3Q7Z3K6 550 aa17.98■□□□□ 0.47
LIME1-209ENST00000494776 FOXP1Q9H334 677 aaPredicted RBP17.98■□□□□ 0.47
LIME1-209ENST00000494776 TUBE1Q9UJT0 475 aa17.98■□□□□ 0.47
LIME1-209ENST00000494776 HBP1O60381 514 aa17.97■□□□□ 0.47
LIME1-209ENST00000494776 ACTN1P12814 892 aa17.97■□□□□ 0.47
LIME1-209ENST00000494776 RBL2Q08999 1139 aa17.97■□□□□ 0.47
LIME1-209ENST00000494776 TAF2Q6P1X5 1199 aa17.97■□□□□ 0.47
LIME1-209ENST00000494776 OTOP2Q7RTS6 562 aa17.97■□□□□ 0.47
LIME1-209ENST00000494776 RSPH3Q86UC2 560 aa17.97■□□□□ 0.47
LIME1-209ENST00000494776 POTEDQ86YR6 584 aa17.97■□□□□ 0.47
LIME1-209ENST00000494776 RDM1Q8NG50 284 aa17.97■□□□□ 0.47
LIME1-209ENST00000494776 ATP8B4Q8TF62 1192 aa17.97■□□□□ 0.47
LIME1-209ENST00000494776 WNT8BQ93098 351 aa17.97■□□□□ 0.47
LIME1-209ENST00000494776 KCNMB3Q9NPA1 279 aa17.97■□□□□ 0.47
LIME1-209ENST00000494776 RSPH10B2B2RC85 870 aa17.96■□□□□ 0.47
LIME1-209ENST00000494776 H3BQV1 296 aa17.96■□□□□ 0.47
LIME1-209ENST00000494776 TBX3O15119 743 aa17.96■□□□□ 0.47
LIME1-209ENST00000494776 RSPH10BP0C881 870 aa17.96■□□□□ 0.47
LIME1-209ENST00000494776 ADAM17P78536 824 aa17.96■□□□□ 0.47
LIME1-209ENST00000494776 TRIM71Q2Q1W2 868 aaKnown RBP17.96■□□□□ 0.47
LIME1-209ENST00000494776 SLFN12Q8IYM2 578 aa17.96■□□□□ 0.47
LIME1-209ENST00000494776 MAFBQ9Y5Q3 323 aaPredicted RBP17.96■□□□□ 0.47
LIME1-209ENST00000494776 ZBBXA8MT70 800 aa17.95■□□□□ 0.46
LIME1-209ENST00000494776 SOX1O00570 391 aaPredicted RBP17.95■□□□□ 0.46
LIME1-209ENST00000494776 CAND2O75155 1236 aa17.95■□□□□ 0.46
LIME1-209ENST00000494776 CTSHP09668 335 aa17.95■□□□□ 0.46
LIME1-209ENST00000494776 CALCRLQ16602 461 aa17.95■□□□□ 0.46
LIME1-209ENST00000494776 ZNF484Q5JVG2 852 aa17.95■□□□□ 0.46
LIME1-209ENST00000494776 MCTP1Q6DN14 999 aa17.95■□□□□ 0.46
LIME1-209ENST00000494776 RUFY4Q6ZNE9 571 aa17.95■□□□□ 0.46
LIME1-209ENST00000494776 NOSTRINQ8IVI9 506 aa17.95■□□□□ 0.46
LIME1-209ENST00000494776 TRAPPC12Q8WVT3 735 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms