RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 TXLNAP40222 546 aa22.29■■□□□ 1.16
SHROOM3-209ENST00000490690 PSMC5P62195 406 aa22.29■■□□□ 1.16
SHROOM3-209ENST00000490690 DNM1Q05193 864 aaKnown RBP22.29■■□□□ 1.16
SHROOM3-209ENST00000490690 PTPAQ15257 358 aa22.29■■□□□ 1.16
SHROOM3-209ENST00000490690 UTP14CQ5TAP6 766 aaKnown RBP22.29■■□□□ 1.16
SHROOM3-209ENST00000490690 PDXDC2PQ6P474 469 aa22.29■■□□□ 1.16
SHROOM3-209ENST00000490690 NFRKBQ6P4R8 1299 aa22.29■■□□□ 1.16
SHROOM3-209ENST00000490690 CXCL17Q6UXB2 119 aa22.29■■□□□ 1.16
SHROOM3-209ENST00000490690 C16orf70Q9BSU1 422 aa22.29■■□□□ 1.16
SHROOM3-209ENST00000490690 TUFT1Q9NNX1 390 aa22.29■■□□□ 1.16
SHROOM3-209ENST00000490690 MAFBQ9Y5Q3 323 aaPredicted RBP22.29■■□□□ 1.16
SHROOM3-209ENST00000490690 POTEFA5A3E0 1075 aa22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 VWA3AA6NCI4 1184 aa22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 COL6A1P12109 1028 aa22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 QARSP47897 775 aaKnown RBP22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 CEBPZQ03701 1054 aaKnown RBP22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 MFSD10Q14728 455 aa22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 C1orf53Q5VUE5 145 aa22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 SWSAP1Q6NVH7 229 aa22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 BCAS3Q9H6U6 928 aa22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 ZSWIM4Q9H7M6 989 aa22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 NRBP2Q9NSY0 501 aa22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 PPME1Q9Y570 386 aa22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 IGSF9BQ9UPX0 1349 aa22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 KDM3AQ9Y4C1 1321 aa22.28■■□□□ 1.16
SHROOM3-209ENST00000490690 FRMPD3Q5JV73 1810 aa22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 EN2P19622 333 aaPredicted RBP22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 PSEN2P49810 448 aa22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 KIAA0753Q2KHM9 967 aa22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 CCDC60Q8IWA6 550 aaPredicted RBP22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 CKAP2LQ8IYA6 745 aa22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 C7orf31Q8N865 590 aa22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 BBXQ8WY36 941 aaPredicted RBP22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 GJA10Q969M2 543 aa22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 SPATA32Q96LK8 384 aa22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 UIMC1Q96RL1 719 aa22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 POLR3CQ9BUI4 534 aaPredicted RBP22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 HTATIP2Q9BUP3 242 aa22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 SENP6Q9GZR1 1112 aaPredicted RBP22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 NT5C3AQ9H0P0 336 aa22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 GABBR1Q9UBS5 961 aa22.27■■□□□ 1.16
SHROOM3-209ENST00000490690 POTEMA6NI47 508 aa22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 HAS3O00219 553 aa22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 HBP1O60381 514 aa22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 ZNF286BP0CG31 522 aa22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 PTGS1P23219 599 aa22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 ITGA7Q13683 1181 aa22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 FOXD4L6Q3SYB3 417 aaPredicted RBP22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 FOXD4L3Q6VB84 417 aaPredicted RBP22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 OTUD6AQ7L8S5 288 aa22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 SESTD1Q86VW0 696 aa22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 EXOC8Q8IYI6 725 aa22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 ZNF579Q8NAF0 562 aaKnown RBP22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 PAWRQ96IZ0 340 aaKnown RBP22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 EIF2AK1Q9BQI3 630 aaKnown RBP22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 TFIP11Q9UBB9 837 aaKnown RBP22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 RCOR1Q9UKL0 485 aa22.26■■□□□ 1.15
SHROOM3-209ENST00000490690 CENPFP49454 3210 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 RRN3P2A6NIE6 340 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 LYPLA2O95372 231 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 RPLP2P05387 115 aaKnown RBP22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 RPA1P27694 616 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 UBA7P41226 1012 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 XKR3Q5GH77 459 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 C4orf19Q8IY42 314 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 ATP8B4Q8TF62 1192 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 CALML4Q96GE6 196 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 CDK5RAP3Q96JB5 506 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 HSD17B14Q9BPX1 270 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 LXNQ9BS40 222 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 TRPC6Q9Y210 931 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 NRCAMQ92823 1304 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 COL1A2P08123 1366 aa22.25■■□□□ 1.15
SHROOM3-209ENST00000490690 POTEB3A0JP26 581 aa22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 ARVCFO00192 962 aa22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 EML1O00423 815 aa22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 TLR3O15455 904 aaKnown RBP22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 CUTAO60888 179 aa22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 XRCC6P12956 609 aaKnown RBP eCLIP22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 MARCKSP29966 332 aaPredicted RBP22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 ME1P48163 572 aa22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 MNX1P50219 401 aaPredicted RBP22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 SOX10P56693 466 aa22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 POTEBQ6S5H4 581 aa22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 SNX29Q8TEQ0 813 aa22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 KAT2BQ92831 832 aa22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 CCDC43Q96MW1 224 aaKnown RBP22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 PYM1Q9BRP8 204 aaKnown RBP22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 FTOQ9C0B1 505 aaKnown RBP eCLIP22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 FBXO2Q9UK22 296 aaPredicted RBP22.24■■□□□ 1.15
SHROOM3-209ENST00000490690 OATP04181 439 aa22.23■■□□□ 1.15
SHROOM3-209ENST00000490690 CCT6AP40227 531 aaKnown RBP22.23■■□□□ 1.15
SHROOM3-209ENST00000490690 ZNF484Q5JVG2 852 aa22.23■■□□□ 1.15
SHROOM3-209ENST00000490690 UBE2Q1Q7Z7E8 422 aa22.23■■□□□ 1.15
SHROOM3-209ENST00000490690 SLC43A3Q8NBI5 491 aa22.23■■□□□ 1.15
SHROOM3-209ENST00000490690 RASSF8Q8NHQ8 419 aa22.23■■□□□ 1.15
SHROOM3-209ENST00000490690 NACC1Q96RE7 527 aa22.23■■□□□ 1.15
SHROOM3-209ENST00000490690 PCYT2Q99447 389 aa22.23■■□□□ 1.15
SHROOM3-209ENST00000490690 JPH2Q9BR39 696 aaPredicted RBP22.23■■□□□ 1.15
SHROOM3-209ENST00000490690 CCDC39Q9UFE4 941 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms