RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 TANGO6Q9C0B7 1094 aa4.92□□□□□ -1.62
CPSF3-205ENST00000489629 CBLCQ9ULV8 474 aa4.92□□□□□ -1.62
CPSF3-205ENST00000489629 PCDHA8Q9Y5H6 950 aa4.92□□□□□ -1.62
CPSF3-205ENST00000489629 SLC4A7Q9Y6M7 1214 aa4.92□□□□□ -1.62
CPSF3-205ENST00000489629 PATE3B3GLJ2 98 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 MAN2B1O00754 1011 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 PYGMP11217 842 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 PTPN1P18031 435 aaKnown RBP4.91□□□□□ -1.62
CPSF3-205ENST00000489629 RASA3Q14644 834 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 LONRF2Q1L5Z9 754 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 ARHGAP36Q6ZRI8 547 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 C16orf59Q7L2K0 433 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 RALYLQ86SE5 291 aaKnown RBP4.91□□□□□ -1.62
CPSF3-205ENST00000489629 MTDHQ86UE4 582 aaKnown RBP4.91□□□□□ -1.62
CPSF3-205ENST00000489629 REXO1L1PQ8IX06 675 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 NLGN4XQ8N0W4 816 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 KISS1RQ969F8 398 aaPredicted RBP4.91□□□□□ -1.62
CPSF3-205ENST00000489629 C8orf37Q96NL8 207 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 TACO1Q9BSH4 297 aaKnown RBP4.91□□□□□ -1.62
CPSF3-205ENST00000489629 DHRS4Q9BTZ2 278 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 SEC61A2Q9H9S3 476 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 SLC39A2Q9NP94 309 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 TSC22D4Q9Y3Q8 395 aa4.91□□□□□ -1.62
CPSF3-205ENST00000489629 H0Y858 1186 aa4.9□□□□□ -1.63
CPSF3-205ENST00000489629 PDE6AP16499 860 aa4.9□□□□□ -1.63
CPSF3-205ENST00000489629 GABREP78334 506 aa4.9□□□□□ -1.63
CPSF3-205ENST00000489629 GUCY1A3Q02108 690 aa4.9□□□□□ -1.63
CPSF3-205ENST00000489629 RBL2Q08999 1139 aa4.9□□□□□ -1.63
CPSF3-205ENST00000489629 GPR155Q7Z3F1 870 aa4.9□□□□□ -1.63
CPSF3-205ENST00000489629 LRP10Q7Z4F1 713 aa4.9□□□□□ -1.63
CPSF3-205ENST00000489629 OSTM1Q86WC4 334 aa4.9□□□□□ -1.63
CPSF3-205ENST00000489629 KLC2Q9H0B6 622 aa4.9□□□□□ -1.63
CPSF3-205ENST00000489629 JADE2Q9NQC1 790 aa4.9□□□□□ -1.63
CPSF3-205ENST00000489629 MRPS23Q9Y3D9 190 aaKnown RBP4.9□□□□□ -1.63
CPSF3-205ENST00000489629 PCDHA9Q9Y5H5 950 aa4.9□□□□□ -1.63
CPSF3-205ENST00000489629 FAM221BA6H8Z2 402 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 CCDC85CA6NKD9 419 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 ZNF561-AS1K7EIQ3 104 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 C4BPAP04003 597 aaKnown RBP4.89□□□□□ -1.63
CPSF3-205ENST00000489629 NAT1P18440 290 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 POLD1P28340 1107 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 JAM2P57087 298 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 LACTBP83111 547 aaPredicted RBP4.89□□□□□ -1.63
CPSF3-205ENST00000489629 ZXDAP98168 799 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 TOP3AQ13472 1001 aaPredicted RBP4.89□□□□□ -1.63
CPSF3-205ENST00000489629 R3HDM1Q15032 1099 aaKnown RBP4.89□□□□□ -1.63
CPSF3-205ENST00000489629 FIGNQ5HY92 759 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 SPRED1Q7Z699 444 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 PTRH1Q86Y79 214 aaKnown RBP4.89□□□□□ -1.63
CPSF3-205ENST00000489629 Q8TCH9 128 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 ARMC5Q96C12 935 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 SMURF1Q9HCE7 757 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 CATSPERZQ9NTU4 200 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 RIC8BQ9NVN3 520 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 PTPN22Q9Y2R2 807 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 ATP23Q9Y6H3 246 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 KDM2BQ8NHM5 1336 aa4.89□□□□□ -1.63
CPSF3-205ENST00000489629 CUTAO60888 179 aa4.88□□□□□ -1.63
CPSF3-205ENST00000489629 CLASP2O75122 1294 aaKnown RBP4.88□□□□□ -1.63
CPSF3-205ENST00000489629 CRTAMO95727 393 aa4.88□□□□□ -1.63
CPSF3-205ENST00000489629 ZNF888P0CJ79 500 aaPredicted RBP4.88□□□□□ -1.63
CPSF3-205ENST00000489629 SRGAP2CP0DJJ0 459 aa4.88□□□□□ -1.63
CPSF3-205ENST00000489629 GJA4P35212 333 aa4.88□□□□□ -1.63
CPSF3-205ENST00000489629 GTF2F1P35269 517 aaKnown RBP eCLIP4.88□□□□□ -1.63
CPSF3-205ENST00000489629 USP10Q14694 798 aaKnown RBP4.88□□□□□ -1.63
CPSF3-205ENST00000489629 CRY1Q16526 586 aa4.88□□□□□ -1.63
CPSF3-205ENST00000489629 JMYQ8N9B5 988 aa4.88□□□□□ -1.63
CPSF3-205ENST00000489629 GSTCDQ8NEC7 633 aa4.88□□□□□ -1.63
CPSF3-205ENST00000489629 SH3RF3Q8TEJ3 882 aaPredicted RBP4.88□□□□□ -1.63
CPSF3-205ENST00000489629 IPO9Q96P70 1041 aaKnown RBP4.88□□□□□ -1.63
CPSF3-205ENST00000489629 HIRIP3Q9BW71 556 aaPredicted RBP4.88□□□□□ -1.63
CPSF3-205ENST00000489629 BTBD7Q9P203 1132 aa4.88□□□□□ -1.63
CPSF3-205ENST00000489629 PPP1R1BQ9UD71 204 aaPredicted RBP4.88□□□□□ -1.63
CPSF3-205ENST00000489629 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.87□□□□□ -1.63
CPSF3-205ENST00000489629 CCDC66A2RUB6 948 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 FOXS1O43638 330 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 AKAP8O43823 692 aaKnown RBP4.87□□□□□ -1.63
CPSF3-205ENST00000489629 ZNF623O75123 536 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 MPIG6BO95866 241 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 KRT15P19012 456 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 PTGS1P23219 599 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 AOAHP28039 575 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 SELENOPP49908 381 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 HERVK_113P62684 666 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 IL13RA1P78552 427 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 SEC23AQ15436 765 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 STILQ15468 1287 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 ZC3H12BQ5HYM0 836 aaKnown RBP4.87□□□□□ -1.63
CPSF3-205ENST00000489629 TCTN3Q6NUS6 607 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 ZNF585AQ6P3V2 769 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 DPP8Q6V1X1 898 aaPredicted RBP4.87□□□□□ -1.63
CPSF3-205ENST00000489629 GNRHR2Q96P88 292 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 DEPDC7Q96QD5 511 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 CDK5RAP1Q96SZ6 601 aaKnown RBP4.87□□□□□ -1.63
CPSF3-205ENST00000489629 CARD11Q9BXL7 1154 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 SLC52A2Q9HAB3 445 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 GALNT8Q9NY28 637 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 SNTG2Q9NY99 539 aa4.87□□□□□ -1.63
CPSF3-205ENST00000489629 ESYT3A0FGR9 886 aa4.86□□□□□ -1.63
CPSF3-205ENST00000489629 KCNK3O14649 394 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms