RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ATP2B1P20020 1258 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 STAT5BP51692 787 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 EPHB4P54760 987 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 PPFIA1Q13136 1202 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 PPIGQ13427 754 aaKnown RBP eCLIP16.68■□□□□ 0.266e-8■■■□□ 18
USP4-212ENST00000486549 BFSP2Q13515 415 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 FAM160B1Q5W0V3 765 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 PPP4R3AQ6IN85 833 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 SWSAP1Q6NVH7 229 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 POTEDQ86YR6 584 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 CCDC60Q8IWA6 550 aaPredicted RBP16.68■□□□□ 0.26
USP4-212ENST00000486549 CCDC155Q8N6L0 562 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 ETNPPLQ8TBG4 499 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 CTAGE1Q96RT6 745 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 RIT2Q99578 217 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 NAP1L4Q99733 375 aaKnown RBP16.68■□□□□ 0.26
USP4-212ENST00000486549 ZNF302Q9NR11 478 aa16.68■□□□□ 0.26
USP4-212ENST00000486549 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.68■□□□□ 0.26
USP4-212ENST00000486549 WDR64B1ANS9 1081 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 TREHO43280 583 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 PSAPP07602 524 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 ACRP10323 421 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 IGBP1P78318 339 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 SMAD3P84022 425 aaKnown RBP16.67■□□□□ 0.26
USP4-212ENST00000486549 PTK7Q13308 1070 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 PLCB4Q15147 1175 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 SHHQ15465 462 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 PLPPR4Q7Z2D5 763 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 SMAP1Q8IYB5 467 aaPredicted RBP16.67■□□□□ 0.26
USP4-212ENST00000486549 RETREG2Q8NC44 543 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 LMBR1Q8WVP7 490 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 DHX38Q92620 1227 aaKnown RBP16.67■□□□□ 0.26
USP4-212ENST00000486549 WNT8BQ93098 351 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 UNC45AQ9H3U1 944 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 PCDHA10Q9Y5I2 948 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 LAMA3Q16787 3333 aa16.67■□□□□ 0.26
USP4-212ENST00000486549 IGKV6D-21A0A0A0MT36 114 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 KIF28PB7ZC32 967 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 WNT7AO00755 349 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 PSMD10O75832 226 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 GNAT1P11488 350 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 HOXC8P31273 242 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 GRIK4Q16099 956 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 C9orf50Q5SZB4 431 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 PDXDC2PQ6P474 469 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 TRMT1LQ7Z2T5 733 aaKnown RBP16.66■□□□□ 0.26
USP4-212ENST00000486549 MIER3Q7Z3K6 550 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 CKAP2LQ8IYA6 745 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 CAGE1Q8TC20 777 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 RNPC3Q96LT9 517 aaKnown RBP16.66■□□□□ 0.26
USP4-212ENST00000486549 MTIF3Q9H2K0 278 aaKnown RBP16.66■□□□□ 0.26
USP4-212ENST00000486549 FOXP1Q9H334 677 aaPredicted RBP16.66■□□□□ 0.26
USP4-212ENST00000486549 DISC1Q9NRI5 854 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 GABBR1Q9UBS5 961 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 NRCAMQ92823 1304 aa16.66■□□□□ 0.26
USP4-212ENST00000486549 POTEB3A0JP26 581 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 H3BQV1 296 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 PITPNM1O00562 1244 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 INSRRP14616 1297 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 JAK3P52333 1124 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 CUL4AQ13619 759 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 ZNF697Q5TEC3 545 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 MCTP1Q6DN14 999 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 POTEBQ6S5H4 581 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 DEFB128Q7Z7B8 93 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 SERINC5Q86VE9 423 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 NOSTRINQ8IVI9 506 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 AFAP1L1Q8TED9 768 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 KCNMB3Q9NPA1 279 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 IL23AQ9NPF7 189 aa16.65■□□□□ 0.26
USP4-212ENST00000486549 SZT2Q5T011 3432 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 K7ELQ4 463 aaPredicted RBP16.64■□□□□ 0.25
USP4-212ENST00000486549 BAG4O95429 457 aaKnown RBP16.64■□□□□ 0.25
USP4-212ENST00000486549 IQCF3P0C7M6 154 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 CKBP12277 381 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 SFNP31947 248 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 THPOP40225 353 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 SLC26A2P50443 739 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 TRIM71Q2Q1W2 868 aaKnown RBP16.64■□□□□ 0.25
USP4-212ENST00000486549 PSRC1Q6PGN9 363 aaPredicted RBP16.64■□□□□ 0.25
USP4-212ENST00000486549 LRRC8DQ7L1W4 858 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 TRAPPC12Q8WVT3 735 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 HAS1Q92839 578 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 ZBTB10Q96DT7 871 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 FAM20AQ96MK3 541 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.64■□□□□ 0.255e-7■■■■□ 23.5
USP4-212ENST00000486549 FOXD4L1Q9NU39 408 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 TUBE1Q9UJT0 475 aa16.64■□□□□ 0.25
USP4-212ENST00000486549 TMEM265A0A087WTH1 108 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 TBX3O15119 743 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 NEMFO60524 1076 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 CTSHP09668 335 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 SELPP16109 830 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 MCM7P33993 719 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 CALCRLQ16602 461 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 UGCGQ16739 394 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 ZNF618Q5T7W0 954 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 LARP1BQ659C4 914 aaKnown RBP16.63■□□□□ 0.25
USP4-212ENST00000486549 RUFY4Q6ZNE9 571 aa16.63■□□□□ 0.25
USP4-212ENST00000486549 C16orf59Q7L2K0 433 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms