RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 MSH4O15457 936 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 ATG7O95352 703 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 PARNO95453 639 aaKnown RBP16.08■□□□□ 0.17
VAMP4-203ENST00000474047 TDP2O95551 362 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 CCNE2O96020 404 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 PSAPP07602 524 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 ST3GAL1Q11201 340 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 HIC1Q14526 733 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 GRIK4Q16099 956 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 Q4G0T1 1027 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 KRT40Q6A162 431 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 SWSAP1Q6NVH7 229 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 PDXDC2PQ6P474 469 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 SMAP1Q8IYB5 467 aaPredicted RBP16.08■□□□□ 0.17
VAMP4-203ENST00000474047 LMBR1Q8WVP7 490 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 DHX38Q92620 1227 aaKnown RBP16.08■□□□□ 0.17
VAMP4-203ENST00000474047 C8orf76Q96K31 380 aa16.08■□□□□ 0.17
VAMP4-203ENST00000474047 CYP3A7-CYP3A51PA0A087WV96 503 aa16.08■□□□□ 0.16
VAMP4-203ENST00000474047 RRN3P2A6NIE6 340 aa16.08■□□□□ 0.16
VAMP4-203ENST00000474047 CCNT1O60563 726 aaKnown RBP16.08■□□□□ 0.16
VAMP4-203ENST00000474047 MMP1P03956 469 aa16.08■□□□□ 0.16
VAMP4-203ENST00000474047 CYP3A7P24462 503 aa16.08■□□□□ 0.16
VAMP4-203ENST00000474047 SLC26A2P50443 739 aa16.08■□□□□ 0.16
VAMP4-203ENST00000474047 MOXD1Q6UVY6 613 aa16.08■□□□□ 0.16
VAMP4-203ENST00000474047 ABHD15Q6UXT9 468 aa16.08■□□□□ 0.16
VAMP4-203ENST00000474047 LENG9Q96B70 501 aa16.08■□□□□ 0.16
VAMP4-203ENST00000474047 PCYT2Q99447 389 aa16.08■□□□□ 0.16
VAMP4-203ENST00000474047 RIT2Q99578 217 aa16.08■□□□□ 0.16
VAMP4-203ENST00000474047 PCDHA10Q9Y5I2 948 aa16.08■□□□□ 0.16
VAMP4-203ENST00000474047 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.07■□□□□ 0.16
VAMP4-203ENST00000474047 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.07■□□□□ 0.16
VAMP4-203ENST00000474047 POTEB3A0JP26 581 aa16.07■□□□□ 0.16
VAMP4-203ENST00000474047 WDR64B1ANS9 1081 aa16.07■□□□□ 0.16
VAMP4-203ENST00000474047 CHMP2AO43633 222 aa16.07■□□□□ 0.16
VAMP4-203ENST00000474047 INSRRP14616 1297 aa16.07■□□□□ 0.16
VAMP4-203ENST00000474047 GCFC2P16383 781 aaKnown RBP16.07■□□□□ 0.16
VAMP4-203ENST00000474047 MCM2P49736 904 aa16.07■□□□□ 0.16
VAMP4-203ENST00000474047 GUCY1B3Q02153 619 aa16.07■□□□□ 0.16
VAMP4-203ENST00000474047 NR5A1Q13285 461 aa16.07■□□□□ 0.16
VAMP4-203ENST00000474047 GNL2Q13823 731 aaKnown RBP16.07■□□□□ 0.16
VAMP4-203ENST00000474047 ZNF618Q5T7W0 954 aa16.07■□□□□ 0.16
VAMP4-203ENST00000474047 POTEBQ6S5H4 581 aa16.07■□□□□ 0.16
VAMP4-203ENST00000474047 TRMT1LQ7Z2T5 733 aaKnown RBP16.07■□□□□ 0.16
VAMP4-203ENST00000474047 RSPH3Q86UC2 560 aa16.07■□□□□ 0.16
VAMP4-203ENST00000474047 DIS3L2Q8IYB7 885 aaKnown RBP16.07■□□□□ 0.16
VAMP4-203ENST00000474047 HERVK_113Q902F9 699 aa16.07■□□□□ 0.16
VAMP4-203ENST00000474047 BACH2Q9BYV9 841 aa16.07■□□□□ 0.16
VAMP4-203ENST00000474047 RSPH10B2B2RC85 870 aa16.06■□□□□ 0.16
VAMP4-203ENST00000474047 BTBD18B2RXH4 712 aa16.06■□□□□ 0.16
VAMP4-203ENST00000474047 EDIL3O43854 480 aa16.06■□□□□ 0.16
VAMP4-203ENST00000474047 RSPH10BP0C881 870 aa16.06■□□□□ 0.16
VAMP4-203ENST00000474047 HOXC8P31273 242 aa16.06■□□□□ 0.16
VAMP4-203ENST00000474047 PLCB4Q15147 1175 aa16.06■□□□□ 0.16
VAMP4-203ENST00000474047 SLC5A5Q92911 643 aa16.06■□□□□ 0.16
VAMP4-203ENST00000474047 DISC1Q9NRI5 854 aa16.06■□□□□ 0.16
VAMP4-203ENST00000474047 TUBE1Q9UJT0 475 aa16.06■□□□□ 0.16
VAMP4-203ENST00000474047 KIF3AQ9Y496 699 aa16.06■□□□□ 0.16
VAMP4-203ENST00000474047 SFNP31947 248 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 JAK3P52333 1124 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 RBL2Q08999 1139 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 TRIM71Q2Q1W2 868 aaKnown RBP16.05■□□□□ 0.16
VAMP4-203ENST00000474047 TAF2Q6P1X5 1199 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 MIER3Q7Z3K6 550 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 CCDC60Q8IWA6 550 aaPredicted RBP16.05■□□□□ 0.16
VAMP4-203ENST00000474047 WNT8BQ93098 351 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 GJA10Q969M2 543 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 GABBR1Q9UBS5 961 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 SLC4A7Q9Y6M7 1214 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 IGKV6D-21A0A0A0MT36 114 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 HBP1O60381 514 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 CAND2O75155 1236 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 BAG4O95429 457 aaKnown RBP16.05■□□□□ 0.16
VAMP4-203ENST00000474047 CTSHP09668 335 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 SMAD3P84022 425 aaKnown RBP16.05■□□□□ 0.16
VAMP4-203ENST00000474047 PPP4R3AQ6IN85 833 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 GPR153Q6NV75 609 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 MBOAT7Q96N66 472 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 SCN5AQ14524 2016 aa16.05■□□□□ 0.16
VAMP4-203ENST00000474047 ADAM17P78536 824 aa16.04■□□□□ 0.16
VAMP4-203ENST00000474047 ATP8B4Q8TF62 1192 aa16.04■□□□□ 0.16
VAMP4-203ENST00000474047 TMX3Q96JJ7 454 aa16.04■□□□□ 0.16
VAMP4-203ENST00000474047 FAM20AQ96MK3 541 aa16.04■□□□□ 0.16
VAMP4-203ENST00000474047 UNC45AQ9H3U1 944 aa16.04■□□□□ 0.16
VAMP4-203ENST00000474047 MYH9P35579 1960 aaKnown RBP16.03■□□□□ 0.16
VAMP4-203ENST00000474047 FAM205CA6NFA0 338 aa16.03■□□□□ 0.16
VAMP4-203ENST00000474047 SLC37A4O43826 429 aa16.03■□□□□ 0.16
VAMP4-203ENST00000474047 PSMD10O75832 226 aa16.03■□□□□ 0.16
VAMP4-203ENST00000474047 EARS2Q5JPH6 523 aaKnown RBP16.03■□□□□ 0.16
VAMP4-203ENST00000474047 ZNF484Q5JVG2 852 aa16.03■□□□□ 0.16
VAMP4-203ENST00000474047 DEFB123Q8N688 67 aa16.03■□□□□ 0.16
VAMP4-203ENST00000474047 TRAPPC12Q8WVT3 735 aa16.03■□□□□ 0.16
VAMP4-203ENST00000474047 FAM49AQ9H0Q0 323 aaPredicted RBP16.03■□□□□ 0.16
VAMP4-203ENST00000474047 NRBP2Q9NSY0 501 aa16.03■□□□□ 0.16
VAMP4-203ENST00000474047 CXXC1Q9P0U4 656 aaPredicted RBP16.03■□□□□ 0.16
VAMP4-203ENST00000474047 MAFBQ9Y5Q3 323 aaPredicted RBP16.03■□□□□ 0.16
VAMP4-203ENST00000474047 TANC1Q9C0D5 1861 aa16.03■□□□□ 0.16
VAMP4-203ENST00000474047 RANBP2P49792 3224 aaKnown RBP16.03■□□□□ 0.16
VAMP4-203ENST00000474047 M0QZ92 97 aa16.02■□□□□ 0.16
VAMP4-203ENST00000474047 NBNO60934 754 aa16.02■□□□□ 0.16
VAMP4-203ENST00000474047 RPLP2P05387 115 aaKnown RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms