RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 DIAPH3Q9NSV4 1193 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 DLL3Q9NYJ7 618 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 ZSWIM5Q9P217 1185 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 ABCB11O95342 1321 aa11.32□□□□□ -0.6
USP39-212ENST00000465514 ANKRD11Q6UB99 2663 aaPredicted RBP11.31□□□□□ -0.6
USP39-212ENST00000465514 B4E1Z4 1266 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 TREHO43280 583 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 SORBS3O60504 671 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 CAND2O75155 1236 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 LMNAP02545 664 aaKnown RBP11.31□□□□□ -0.6
USP39-212ENST00000465514 HOXD8P13378 290 aaPredicted RBP11.31□□□□□ -0.6
USP39-212ENST00000465514 HOXC8P31273 242 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 NT5C2P49902 561 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 CLCN5P51795 746 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 ANGPT1Q15389 498 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 ASPRV1Q53RT3 343 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 CWF19L1Q69YN2 538 aaKnown RBP11.31□□□□□ -0.6
USP39-212ENST00000465514 ENAHQ8N8S7 591 aaPredicted RBP11.31□□□□□ -0.6
USP39-212ENST00000465514 SYTL5Q8TDW5 730 aaPredicted RBP11.31□□□□□ -0.6
USP39-212ENST00000465514 NSUN6Q8TEA1 469 aaKnown RBP11.31□□□□□ -0.6
USP39-212ENST00000465514 ATP8B4Q8TF62 1192 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 NEK1Q96PY6 1258 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 HINFPQ9BQA5 517 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 APOL5Q9BWW9 433 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 MAF1Q9H063 256 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 VAT1LQ9HCJ6 419 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 COL20A1Q9P218 1284 aa11.31□□□□□ -0.6
USP39-212ENST00000465514 DDX41Q9UJV9 622 aaKnown RBP11.31□□□□□ -0.6
USP39-212ENST00000465514 FNDC1Q4ZHG4 1894 aaPredicted RBP11.31□□□□□ -0.6
USP39-212ENST00000465514 BAZ2BQ9UIF8 2168 aaKnown RBP11.31□□□□□ -0.6
USP39-212ENST00000465514 HIP1O00291 1037 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 DHX16O60231 1041 aaKnown RBP11.3□□□□□ -0.6
USP39-212ENST00000465514 DGKIO75912 1065 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 PARP1P09874 1014 aaKnown RBP11.3□□□□□ -0.6
USP39-212ENST00000465514 ARP10275 920 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 LAMC2Q13753 1193 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 STXBP2Q15833 593 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 IMMTQ16891 758 aaKnown RBP11.3□□□□□ -0.6
USP39-212ENST00000465514 QRICH1Q2TAL8 776 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 NAALADL2Q58DX5 795 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 MCF2L2Q86YR7 1114 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 CCDC105Q8IYK2 499 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 FLCNQ8NFG4 579 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 IWS1Q96ST2 819 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 RMDN3Q96TC7 470 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 DSCC1Q9BVC3 393 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 S1PR5Q9H228 398 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 JMJD4Q9H9V9 463 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 CDH22Q9UJ99 828 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 MRPL11Q9Y3B7 192 aaKnown RBP11.3□□□□□ -0.6
USP39-212ENST00000465514 NR2E1Q9Y466 385 aa11.3□□□□□ -0.6
USP39-212ENST00000465514 C2CD4DB7Z1M9 353 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 ASGR2P07307 311 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 SMIM10L2AP0DMW4 78 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 SMIM10L2BP0DMW5 78 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 GHRP10912 638 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 HSDL1Q3SXM5 330 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 PAN2Q504Q3 1202 aaKnown RBP11.29□□□□□ -0.6
USP39-212ENST00000465514 ARHGEF16Q5VV41 709 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 EXOC6Q8TAG9 804 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 CYP2W1Q8TAV3 490 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 SPATA33Q96N06 139 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 C16orf70Q9BSU1 422 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 KRT23Q9C075 422 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 RALYQ9UKM9 306 aaKnown RBP11.29□□□□□ -0.6
USP39-212ENST00000465514 MRVI1Q9Y6F6 885 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 GPR179Q6PRD1 2367 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 DENND4AQ7Z401 1863 aa11.29□□□□□ -0.6
USP39-212ENST00000465514 FSD2A1L4K1 749 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 PI15O43692 258 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 PPFIA3O75145 1194 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 PPFIA4O75335 1185 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 EIF3JO75822 258 aaKnown RBP11.28□□□□□ -0.6
USP39-212ENST00000465514 CFBP00751 764 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 EIF2AK2P19525 551 aaKnown RBP11.28□□□□□ -0.6
USP39-212ENST00000465514 TECP42680 631 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 COL9A2Q14055 689 aaPredicted RBP11.28□□□□□ -0.6
USP39-212ENST00000465514 DUSP6Q16828 381 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 RSPO4Q2I0M5 234 aaPredicted RBP11.28□□□□□ -0.6
USP39-212ENST00000465514 FAM26DQ5JW98 314 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 ANKRD54Q6NXT1 300 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 SYCE2Q6PIF2 218 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 CMTR2Q8IYT2 770 aaKnown RBP11.28□□□□□ -0.6
USP39-212ENST00000465514 STAG2Q8N3U4 1231 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 MICAL1Q8TDZ2 1067 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 UBAC1Q9BSL1 405 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 SEMA4AQ9H3S1 761 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 CNNM2Q9H8M5 875 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 R4GN57 208 aa11.28□□□□□ -0.6
USP39-212ENST00000465514 FASNP49327 2511 aaKnown RBP11.28□□□□□ -0.6
USP39-212ENST00000465514 KLRF2D3W0D1 207 aa11.27□□□□□ -0.61
USP39-212ENST00000465514 ENPP3O14638 875 aa11.27□□□□□ -0.61
USP39-212ENST00000465514 OPLAHO14841 1288 aa11.27□□□□□ -0.61
USP39-212ENST00000465514 CHRNA1P02708 482 aa11.27□□□□□ -0.61
USP39-212ENST00000465514 NR3C2P08235 984 aa11.27□□□□□ -0.61
USP39-212ENST00000465514 SRGAP2BP0DMP2 458 aa11.27□□□□□ -0.61
USP39-212ENST00000465514 AOC1P19801 751 aa11.27□□□□□ -0.61
USP39-212ENST00000465514 IFIT1BQ5T764 474 aaKnown RBP11.27□□□□□ -0.61
USP39-212ENST00000465514 MYSM1Q5VVJ2 828 aa11.27□□□□□ -0.61
USP39-212ENST00000465514 LLGL2Q6P1M3 1020 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms