RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SCINQ9Y6U3 715 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 MAP3K19Q56UN5 1328 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 NEURL1BA8MQ27 555 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 IKBKBO14920 756 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 MYCP01106 439 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 CYBBP04839 570 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 NR2F2P24468 414 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 LARP4BQ92615 738 aaKnown RBP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 KIAA1586Q9HCI6 787 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 GCNT4Q9P109 453 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 GPATCH8Q9UKJ3 1502 aaKnown RBP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 PRPF4O43172 522 aaKnown RBP eCLIP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 FBLN1P23142 703 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 BASP1P80723 227 aaKnown RBP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 PPP4R3CPQ6ZMV5 832 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 SCYL3Q8IZE3 742 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 RAET1EQ8TD07 263 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 GJA10Q969M2 543 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 NAF1Q96HR8 494 aaKnown RBP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 DHTKD1Q96HY7 919 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 PBKQ96KB5 322 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 MED4Q9NPJ6 270 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 SENP1Q9P0U3 644 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 BUB1O43683 1085 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 TOM1L1O75674 476 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 RALAP11233 206 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 PSMD2Q13200 908 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 SLC26A7Q8TE54 656 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.36□□□□□ -1.233e-8■□□□□ 9.3
SCN1A-204ENST00000423058 CYP26B1Q9NR63 512 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 ANGPTL2Q9UKU9 493 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 PCDHA4Q9UN74 947 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 MT-ND3P03897 115 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 SKOR1P84550 965 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 CUL1Q13616 776 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 TRIM60Q495X7 471 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 TOGARAM2Q6ZUX3 1019 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 CATSPER4Q7RTX7 472 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 CCDC24Q8N4L8 307 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 PDCD6IPQ8WUM4 868 aaKnown RBP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 FAM96AQ9H5X1 160 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 PRAG1Q86YV5 1406 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 A0A1W2PP64 1363 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 KIF24Q5T7B8 1368 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 ASNSP08243 561 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 NSUN2Q08J23 767 aaKnown RBP eCLIP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 CRLF3Q8IUI8 442 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 ZMAT2Q96NC0 199 aaKnown RBP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 FIS1Q9Y3D6 152 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 DAAM1Q9Y4D1 1078 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 CLRN2A0PK11 232 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 COBLO75128 1261 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 ECEL1O95672 775 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 TTLL4Q14679 1199 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 CIAPIN1Q6FI81 312 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 SPICE1Q8N0Z3 855 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 TTLL6Q8N841 843 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 FBXO41Q8TF61 875 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 FAM227BQ96M60 508 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 TRIM4Q9C037 500 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 CBX8Q9HC52 389 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 SLC39A2Q9NP94 309 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 INTS9Q9NV88 658 aaKnown RBP7.36□□□□□ -1.23
SCN1A-204ENST00000423058 SERPINB13Q9UIV8 391 aa7.36□□□□□ -1.23
SCN1A-204ENST00000423058 ERBB4Q15303 1308 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 hCG_1642624A0A1W2PR95 340 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 LRRD1A4D1F6 860 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 E2F6O75461 281 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 MAP4P27816 1152 aaKnown RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 CENPUQ71F23 418 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 DNAJC10Q8IXB1 793 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 DCUN1D1Q96GG9 259 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 COPG1Q9Y678 874 aaKnown RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 CCDC78A2IDD5 438 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 NCF2P19878 526 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 MARK3P27448 753 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 ST8SIA6P61647 398 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 CHRNDQ07001 517 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 PTGDRQ13258 359 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 LONRF3Q496Y0 759 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 FSCBQ5H9T9 825 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 ZBTB41Q5SVQ8 909 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 KCTD1Q719H9 257 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 KRT27Q7Z3Y8 459 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 SDR42E1Q8WUS8 393 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 ZFP42Q96MM3 310 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 CAPS2Q9BXY5 557 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 KIAA1468Q9P260 1216 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 PCDHGB4Q9UN71 923 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 MAGED2Q9UNF1 606 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-204ENST00000423058 PCDHB15Q9Y5E8 787 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 SNX14Q9Y5W7 946 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 POTEB3A0JP26 581 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 GOLGA8SH3BPF8 625 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 ZNF197O14709 1029 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 CYP4A11Q02928 519 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 MTERF2Q49AM1 385 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 RASIP1Q5U651 963 aa7.35□□□□□ -1.23
SCN1A-204ENST00000423058 POTEBQ6S5H4 581 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms