RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 C11orf74Q86VG3 221 aa6.27□□□□□ -1.41
VPS54-204ENST00000416400 OSTM1Q86WC4 334 aa6.27□□□□□ -1.41
VPS54-204ENST00000416400 FAM126BQ8IXS8 530 aa6.27□□□□□ -1.41
VPS54-204ENST00000416400 CPA5Q8WXQ8 436 aa6.27□□□□□ -1.41
VPS54-204ENST00000416400 TOE1Q96GM8 510 aaKnown RBP6.27□□□□□ -1.41
VPS54-204ENST00000416400 SMAD5Q99717 465 aaKnown RBP6.27□□□□□ -1.41
VPS54-204ENST00000416400 THG1LQ9NWX6 298 aaKnown RBP6.27□□□□□ -1.41
VPS54-204ENST00000416400 TCEAL9Q9UHQ7 104 aa6.27□□□□□ -1.41
VPS54-204ENST00000416400 CNOT6Q9ULM6 557 aaKnown RBP6.27□□□□□ -1.41
VPS54-204ENST00000416400 THRAP3Q9Y2W1 955 aaKnown RBP6.27□□□□□ -1.41
VPS54-204ENST00000416400 PCDHA5Q9Y5H7 936 aa6.27□□□□□ -1.41
VPS54-204ENST00000416400 ULK1O75385 1050 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 TSPAN15O95858 294 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 CYP2C8P10632 490 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 ATP2A2P16615 1042 aaKnown RBP6.26□□□□□ -1.41
VPS54-204ENST00000416400 KPNA1P52294 538 aaPredicted RBP6.26□□□□□ -1.41
VPS54-204ENST00000416400 EPHB3P54753 998 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 EPHB1P54762 984 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 CACNB2Q08289 660 aaPredicted RBP6.26□□□□□ -1.41
VPS54-204ENST00000416400 TUSC3Q13454 348 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 ATP13A4Q4VNC1 1196 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 ZNF385BQ569K4 471 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 CCDC181Q5TID7 509 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 IQSEC1Q6DN90 963 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 KCTD1Q719H9 257 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.26□□□□□ -1.41
VPS54-204ENST00000416400 CNTD1Q8N815 330 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 ARRDC4Q8NCT1 418 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 COG1Q8WTW3 980 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 CHTF18Q8WVB6 975 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 EMC7Q9NPA0 242 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 EID1Q9Y6B2 187 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 ATP23Q9Y6H3 246 aa6.26□□□□□ -1.41
VPS54-204ENST00000416400 IRS2Q9Y4H2 1338 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 HIP1RO75146 1068 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 C1QTNF9P0C862 333 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 MED14OSP0DP75 135 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 JAM2P57087 298 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 LACTBP83111 547 aaPredicted RBP6.25□□□□□ -1.41
VPS54-204ENST00000416400 GRIN1Q05586 938 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 HABP4Q5JVS0 413 aaKnown RBP6.25□□□□□ -1.41
VPS54-204ENST00000416400 BTBD8Q5XKL5 378 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 OTOP1Q7RTM1 612 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 PTRH1Q86Y79 214 aaKnown RBP6.25□□□□□ -1.41
VPS54-204ENST00000416400 MIB1Q86YT6 1006 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 FMNL3Q8IVF7 1028 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 BOCQ9BWV1 1114 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 CD244Q9BZW8 370 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 GCM1Q9NP62 436 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 SPTLC3Q9NUV7 552 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 RIC8BQ9NVN3 520 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 DTLQ9NZJ0 730 aa6.25□□□□□ -1.41
VPS54-204ENST00000416400 SMG5Q9UPR3 1016 aaKnown RBP6.25□□□□□ -1.41
VPS54-204ENST00000416400 SLC12A8A0AV02 714 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 H7C1D1 291 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 ZNF561-AS1K7EIQ3 104 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 KRT37O76014 449 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 GJA4P35212 333 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 NEK2P51955 445 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 FOXO4P98177 505 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 FIGNQ5HY92 759 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 HDGFL2Q7Z4V5 671 aaPredicted RBP6.24□□□□□ -1.41
VPS54-204ENST00000416400 B3GNT8Q7Z7M8 397 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 IGDCC3Q8IVU1 814 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 RBM12BQ8IXT5 1001 aaKnown RBP6.24□□□□□ -1.41
VPS54-204ENST00000416400 TTLL11Q8NHH1 800 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 SMARCC2Q8TAQ2 1214 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 TRHDEQ9UKU6 1024 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 SRPK3Q9UPE1 567 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 KCTD3Q9Y597 815 aa6.24□□□□□ -1.41
VPS54-204ENST00000416400 NPIPB6E9PJ23 425 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 PRKD3O94806 890 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 MC3RP41968 323 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 STAT5AP42229 794 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 IRF9Q00978 393 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 MCL1Q07820 350 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 ZNF124Q15973 351 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 KCNA10Q16322 511 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 PAN2Q504Q3 1202 aaKnown RBP6.23□□□□□ -1.41
VPS54-204ENST00000416400 SYDE2Q5VT97 1194 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 CREB3L3Q68CJ9 461 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 CNKSR3Q6P9H4 555 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 RAVER1Q8IY67 606 aaKnown RBP6.23□□□□□ -1.41
VPS54-204ENST00000416400 EFHBQ8N7U6 833 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 CLEC4DQ8WXI8 215 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 TRIM8Q9BZR9 551 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 CCDC8Q9H0W5 538 aaPredicted RBP6.23□□□□□ -1.41
VPS54-204ENST00000416400 SMURF1Q9HCE7 757 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 OXSMQ9NWU1 459 aa6.23□□□□□ -1.41
VPS54-204ENST00000416400 KCNK3O14649 394 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 LTFP02788 710 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 AMY2AP04746 511 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 C8AP07357 584 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 ATF2P15336 505 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 YBX3P16989 372 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS54-204ENST00000416400 PI3P19957 117 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 AMY2BP19961 511 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 FBLN1P23142 703 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 LIMS1P48059 325 aa6.22□□□□□ -1.41
VPS54-204ENST00000416400 EPHA5P54756 1037 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms