RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 AEBP2Q6ZN18 517 aaPredicted RBP22.04■■□□□ 1.12
VPS54-204ENST00000416400 CHIC1Q5VXU3 224 aa21.74■■□□□ 1.07
VPS54-204ENST00000416400 PHF23Q9BUL5 403 aaPredicted RBP19.06■□□□□ 0.64
VPS54-204ENST00000416400 SENP3Q9H4L4 574 aaPredicted RBP18.83■□□□□ 0.6
VPS54-204ENST00000416400 PLPPR3Q6T4P5 718 aa17.78■□□□□ 0.44
VPS54-204ENST00000416400 FOXD1Q16676 465 aa17.37■□□□□ 0.37
VPS54-204ENST00000416400 POTEDQ86YR6 584 aa16.96■□□□□ 0.31
VPS54-204ENST00000416400 ADRA2BP18089 450 aa16.83■□□□□ 0.28
VPS54-204ENST00000416400 PPP6R1Q9UPN7 881 aa16.77■□□□□ 0.28
VPS54-204ENST00000416400 PIAS4Q8N2W9 510 aaPredicted RBP16.5■□□□□ 0.23
VPS54-204ENST00000416400 MSH5O43196 834 aa16.07■□□□□ 0.16
VPS54-204ENST00000416400 PPP4R3CPQ6ZMV5 832 aa15.65■□□□□ 0.1
VPS54-204ENST00000416400 SCAF1Q9H7N4 1312 aaKnown RBP15.54■□□□□ 0.08
VPS54-204ENST00000416400 KCNA4P22459 653 aa15.4■□□□□ 0.06
VPS54-204ENST00000416400 NCBP3Q53F19 620 aaKnown RBP15.39■□□□□ 0.05
VPS54-204ENST00000416400 CNKSR2Q8WXI2 1034 aa15.21■□□□□ 0.03
VPS54-204ENST00000416400 MAPK8IP2Q13387 824 aaPredicted RBP15.2■□□□□ 0.02
VPS54-204ENST00000416400 NPM3O75607 178 aaKnown RBP15.03■□□□□ -0
VPS54-204ENST00000416400 DMRT2Q9Y5R5 561 aa15□□□□□ -0.01
VPS54-204ENST00000416400 RNF216Q9NWF9 866 aaPredicted RBP14.86□□□□□ -0.03
VPS54-204ENST00000416400 SLC4A1APQ9BWU0 796 aaKnown RBP14.76□□□□□ -0.05
VPS54-204ENST00000416400 HOXD11P31277 338 aaPredicted RBP14.72□□□□□ -0.05
VPS54-204ENST00000416400 DNAJC5BQ9UF47 199 aa14.52□□□□□ -0.09
VPS54-204ENST00000416400 EHMT2Q96KQ7 1210 aa14.49□□□□□ -0.09
VPS54-204ENST00000416400 DCAF8L1A6NGE4 600 aa14.47□□□□□ -0.09
VPS54-204ENST00000416400 FOXD4L1Q9NU39 408 aa14.19□□□□□ -0.14
VPS54-204ENST00000416400 CSRNP3Q8WYN3 585 aa14.18□□□□□ -0.14
VPS54-204ENST00000416400 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.16□□□□□ -0.148e-8■■□□□ 12.8
VPS54-204ENST00000416400 SLC4A2P04920 1241 aa14.11□□□□□ -0.15
VPS54-204ENST00000416400 ZBTB22O15209 634 aa14.1□□□□□ -0.15
VPS54-204ENST00000416400 MYCNP04198 464 aaPredicted RBP13.95□□□□□ -0.18
VPS54-204ENST00000416400 CACNB1Q02641 598 aaPredicted RBP13.88□□□□□ -0.19
VPS54-204ENST00000416400 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.84□□□□□ -0.19
VPS54-204ENST00000416400 HNRNPUL2Q1KMD3 747 aaKnown RBP13.84□□□□□ -0.19
VPS54-204ENST00000416400 U3KPZ7 1027 aaPredicted RBP13.82□□□□□ -0.2
VPS54-204ENST00000416400 SAMD1Q6SPF0 538 aaPredicted RBP13.76□□□□□ -0.21
VPS54-204ENST00000416400 APLP2Q06481 763 aa13.72□□□□□ -0.21
VPS54-204ENST00000416400 RNF39Q9H2S5 420 aa13.71□□□□□ -0.21
VPS54-204ENST00000416400 ATXN8OSP0DMR3 200 aa13.7□□□□□ -0.22
VPS54-204ENST00000416400 C1QBPQ07021 282 aaKnown RBP13.62□□□□□ -0.23
VPS54-204ENST00000416400 CAPN15O75808 1086 aa13.45□□□□□ -0.26
VPS54-204ENST00000416400 ATF5Q9Y2D1 282 aaPredicted RBP13.44□□□□□ -0.26
VPS54-204ENST00000416400 ZNF219Q9P2Y4 722 aaPredicted RBP13.42□□□□□ -0.26
VPS54-204ENST00000416400 TRHP20396 242 aaPredicted RBP13.41□□□□□ -0.26
VPS54-204ENST00000416400 SPINK5Q9NQ38 1064 aaPredicted RBP13.4□□□□□ -0.26
VPS54-204ENST00000416400 POLA2Q14181 598 aa13.18□□□□□ -0.3
VPS54-204ENST00000416400 ABCB7O75027 752 aa13.15□□□□□ -0.3
VPS54-204ENST00000416400 DSG3P32926 999 aa13.1□□□□□ -0.31
VPS54-204ENST00000416400 FBLN2P98095 1184 aa13.07□□□□□ -0.32
VPS54-204ENST00000416400 POTEHQ6S545 545 aa13.05□□□□□ -0.32
VPS54-204ENST00000416400 ZBTB12Q9Y330 459 aaPredicted RBP13.05□□□□□ -0.32
VPS54-204ENST00000416400 FKBP8Q14318 412 aa12.9□□□□□ -0.34
VPS54-204ENST00000416400 MKRN4PQ13434 485 aaPredicted RBP12.87□□□□□ -0.35
VPS54-204ENST00000416400 SPDYE4A6NLX3 237 aa12.77□□□□□ -0.37
VPS54-204ENST00000416400 OSCARQ8IYS5 282 aa12.7□□□□□ -0.38
VPS54-204ENST00000416400 SPDYE2BA6NHP3 402 aa12.66□□□□□ -0.38
VPS54-204ENST00000416400 SPDYE6P0CI01 402 aa12.66□□□□□ -0.38
VPS54-204ENST00000416400 SPDYE2Q495Y8 402 aa12.66□□□□□ -0.38
VPS54-204ENST00000416400 ZNF692Q9BU19 519 aaPredicted RBP12.65□□□□□ -0.38
VPS54-204ENST00000416400 RBM42Q9BTD8 480 aaKnown RBP12.59□□□□□ -0.39
VPS54-204ENST00000416400 SSUH2Q9Y2M2 353 aa12.5□□□□□ -0.41
VPS54-204ENST00000416400 FBXO3Q9UK99 471 aa12.48□□□□□ -0.41
VPS54-204ENST00000416400 PABPN1Q86U42 306 aaKnown RBP eCLIP12.46□□□□□ -0.41
VPS54-204ENST00000416400 PROM2Q8N271 834 aa12.45□□□□□ -0.42
VPS54-204ENST00000416400 AKT1S1Q96B36 256 aa12.42□□□□□ -0.42
VPS54-204ENST00000416400 STAG3Q9UJ98 1225 aa12.35□□□□□ -0.43
VPS54-204ENST00000416400 SPDYE1Q8NFV5 336 aaPredicted RBP12.28□□□□□ -0.44
VPS54-204ENST00000416400 REM2Q8IYK8 340 aaPredicted RBP12.26□□□□□ -0.45
VPS54-204ENST00000416400 CLEC11AQ9Y240 323 aa12.24□□□□□ -0.45
VPS54-204ENST00000416400 VASPP50552 380 aaPredicted RBP12.22□□□□□ -0.45
VPS54-204ENST00000416400 PLEKHG5O94827 1062 aa12.18□□□□□ -0.46
VPS54-204ENST00000416400 PLCD3Q8N3E9 789 aa12.16□□□□□ -0.46
VPS54-204ENST00000416400 PRR29P0C7W0 189 aa12.14□□□□□ -0.47
VPS54-204ENST00000416400 MIER1Q8N108 512 aa12.14□□□□□ -0.47
VPS54-204ENST00000416400 PITPNM1O00562 1244 aa12.1□□□□□ -0.47
VPS54-204ENST00000416400 KLHL34Q8N239 644 aa12.09□□□□□ -0.47
VPS54-204ENST00000416400 ZBTB47Q9UFB7 747 aaPredicted RBP12.04□□□□□ -0.48
VPS54-204ENST00000416400 AMER1Q5JTC6 1135 aaPredicted RBP12.03□□□□□ -0.48
VPS54-204ENST00000416400 IFNLR1Q8IU57 520 aaPredicted RBP12.01□□□□□ -0.49
VPS54-204ENST00000416400 CHRDL2Q6WN34 429 aa11.95□□□□□ -0.5
VPS54-204ENST00000416400 RTN4Q9NQC3 1192 aaKnown RBP11.95□□□□□ -0.5
VPS54-204ENST00000416400 SPOCK2Q92563 424 aa11.94□□□□□ -0.5
VPS54-204ENST00000416400 CREBZFQ9NS37 354 aa11.91□□□□□ -0.5
VPS54-204ENST00000416400 NPM1P06748 294 aaKnown RBP eCLIP11.85□□□□□ -0.51
VPS54-204ENST00000416400 PRKAR2AP13861 404 aaKnown RBP11.85□□□□□ -0.51
VPS54-204ENST00000416400 FXR2P51116 673 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS54-204ENST00000416400 CHADLQ6NUI6 762 aa11.84□□□□□ -0.51
VPS54-204ENST00000416400 PIP4P2Q8N4L2 257 aa11.8□□□□□ -0.52
VPS54-204ENST00000416400 CIZ1Q9ULV3 898 aaPredicted RBP11.77□□□□□ -0.53
VPS54-204ENST00000416400 FARP1Q9Y4F1 1045 aaPredicted RBP11.76□□□□□ -0.53
VPS54-204ENST00000416400 MNX1P50219 401 aaPredicted RBP11.75□□□□□ -0.53
VPS54-204ENST00000416400 GSE1Q14687 1217 aa11.72□□□□□ -0.53
VPS54-204ENST00000416400 DCAF8Q5TAQ9 597 aa11.72□□□□□ -0.53
VPS54-204ENST00000416400 FAM212AQ96EL1 285 aa11.72□□□□□ -0.53
VPS54-204ENST00000416400 NUBP1P53384 320 aa11.7□□□□□ -0.54
VPS54-204ENST00000416400 SP7Q8TDD2 431 aaPredicted RBP11.69□□□□□ -0.54
VPS54-204ENST00000416400 ECM2O94769 699 aaPredicted RBP11.67□□□□□ -0.54
VPS54-204ENST00000416400 PAK3O75914 559 aaPredicted RBP11.65□□□□□ -0.54
VPS54-204ENST00000416400 TRIM41Q8WV44 630 aa11.65□□□□□ -0.54
VPS54-204ENST00000416400 PKD2Q13563 968 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms