RNA–Protein interactions for RNA: ENST00000354537.1

CAPN9-202, Transcript of calpain 9, humanhuman

TSL 1 (best) BASIC

Gene CAPN9, Length 2,484 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN9-202ENST00000354537 TMEM260Q9NX78 707 aa12.49□□□□□ -0.41
CAPN9-202ENST00000354537 DDX20Q9UHI6 824 aaKnown RBP12.49□□□□□ -0.41
CAPN9-202ENST00000354537 LEMD3Q9Y2U8 911 aa12.49□□□□□ -0.41
CAPN9-202ENST00000354537 THRAP3Q9Y2W1 955 aaKnown RBP12.49□□□□□ -0.41
CAPN9-202ENST00000354537 PLIN4Q96Q06 1357 aa12.49□□□□□ -0.41
CAPN9-202ENST00000354537 SART1O43290 800 aaKnown RBP12.49□□□□□ -0.41
CAPN9-202ENST00000354537 FLOT1O75955 427 aa12.49□□□□□ -0.41
CAPN9-202ENST00000354537 PLCG2P16885 1265 aa12.49□□□□□ -0.41
CAPN9-202ENST00000354537 RDXP35241 583 aaKnown RBP12.49□□□□□ -0.41
CAPN9-202ENST00000354537 PREPLQ4J6C6 727 aaPredicted RBP12.49□□□□□ -0.41
CAPN9-202ENST00000354537 USP17L2Q6R6M4 530 aa12.49□□□□□ -0.41
CAPN9-202ENST00000354537 FAM133AQ8N9E0 248 aa12.49□□□□□ -0.41
CAPN9-202ENST00000354537 NUDT12Q9BQG2 462 aa12.49□□□□□ -0.41
CAPN9-202ENST00000354537 MXD3Q9BW11 206 aa12.49□□□□□ -0.41
CAPN9-202ENST00000354537 COL5A3P25940 1745 aaPredicted RBP12.49□□□□□ -0.41
CAPN9-202ENST00000354537 POTEMA6NI47 508 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 TULP1O00294 542 aaPredicted RBP12.48□□□□□ -0.41
CAPN9-202ENST00000354537 CEP104O60308 925 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 TDP2O95551 362 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 EPS15P42566 896 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 CLK2P49760 499 aaKnown RBP12.48□□□□□ -0.41
CAPN9-202ENST00000354537 KCNH2Q12809 1159 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 ADAM9Q13443 819 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 VPS36Q86VN1 386 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 GLIS3Q8NEA6 775 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 TPCN2Q8NHX9 752 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 TGFBRAP1Q8WUH2 860 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 PACSIN1Q9BY11 444 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 KDM4CQ9H3R0 1056 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 SLC40A1Q9NP59 571 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 EMILIN3Q9NT22 766 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 NAGPAQ9UK23 515 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 TRAF3IP3Q9Y228 551 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 KIF13BQ9NQT8 1826 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 C10orf71Q711Q0 1435 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 SNHG28P0DPA3 235 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 PTK2Q05397 1052 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 TRADDQ15628 312 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 ZKSCAN4Q969J2 545 aaPredicted RBP12.48□□□□□ -0.41
CAPN9-202ENST00000354537 CCDC114Q96M63 670 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 GLT8D2Q9H1C3 349 aa12.48□□□□□ -0.41
CAPN9-202ENST00000354537 PPANQ9NQ55 473 aaKnown RBP12.48□□□□□ -0.41
CAPN9-202ENST00000354537 PACSIN2Q9UNF0 486 aaPredicted RBP12.48□□□□□ -0.41
CAPN9-202ENST00000354537 NEDD9Q14511 834 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 ZNF571Q7Z3V5 609 aaPredicted RBP12.47□□□□□ -0.41
CAPN9-202ENST00000354537 CROCCP2Q86T23 111 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 CACNA2D3Q8IZS8 1091 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 METTL13Q8N6R0 699 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 SLC44A5Q8NCS7 719 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 SCFD1Q8WVM8 642 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 HAS1Q92839 578 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 TATDN2Q93075 761 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 SEC16BQ96JE7 1060 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 METTL14Q9HCE5 456 aaKnown RBP12.47□□□□□ -0.41
CAPN9-202ENST00000354537 DDX25Q9UHL0 483 aaKnown RBP12.47□□□□□ -0.41
CAPN9-202ENST00000354537 NOC2LQ9Y3T9 749 aaKnown RBP12.47□□□□□ -0.41
CAPN9-202ENST00000354537 STK24Q9Y6E0 443 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 GPR75-ASB3A0A0A6YYF3 556 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 PNMA6FA0A0J9YX94 578 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 KRIT1O00522 736 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 PPFIA2O75334 1257 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 AFPP02771 609 aaKnown RBP12.47□□□□□ -0.41
CAPN9-202ENST00000354537 PLA2G4BP0C869 781 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 PDHBP11177 359 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 HPDP32754 393 aaPredicted RBP12.47□□□□□ -0.41
CAPN9-202ENST00000354537 HSPA2P54652 639 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 ECM1Q16610 540 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 ANKRD20A8PQ5CZ79 823 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 GKAP1Q5VSY0 366 aaPredicted RBP12.47□□□□□ -0.41
CAPN9-202ENST00000354537 ALKBH5Q6P6C2 394 aaKnown RBP12.47□□□□□ -0.41
CAPN9-202ENST00000354537 TMC3Q7Z5M5 1100 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 TLCD1Q96CP7 247 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 SPAG5Q96R06 1193 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 RTFDC1Q9BY42 306 aaPredicted RBP12.47□□□□□ -0.41
CAPN9-202ENST00000354537 CPVLQ9H3G5 476 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 PCDHA12Q9UN75 941 aa12.47□□□□□ -0.41
CAPN9-202ENST00000354537 DDX60LQ5H9U9 1706 aaKnown RBP12.47□□□□□ -0.41
CAPN9-202ENST00000354537 LOC102724159A0A0B4J2E5 919 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 GTPBP10A4D1E9 387 aaKnown RBP12.46□□□□□ -0.41
CAPN9-202ENST00000354537 SLC16A3O15427 465 aaKnown RBP12.46□□□□□ -0.41
CAPN9-202ENST00000354537 KIF1CO43896 1103 aaKnown RBP12.46□□□□□ -0.41
CAPN9-202ENST00000354537 DNAJC8O75937 253 aaPredicted RBP12.46□□□□□ -0.41
CAPN9-202ENST00000354537 H2AFZP0C0S5 128 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 UCHL3P15374 230 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 MRPL12P52815 198 aaKnown RBP12.46□□□□□ -0.41
CAPN9-202ENST00000354537 XRCC4Q13426 336 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 PWP2Q15269 919 aaKnown RBP12.46□□□□□ -0.41
CAPN9-202ENST00000354537 SNCBQ16143 134 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 NBPF9Q3BBW0 867 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 H2AFVQ71UI9 128 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 PEX26Q7Z412 305 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 FMNL3Q8IVF7 1028 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 RAPGEF5Q92565 580 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 CEP95Q96GE4 821 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 FAM163AQ96GL9 167 aaPredicted RBP12.46□□□□□ -0.41
CAPN9-202ENST00000354537 SGSM3Q96HU1 749 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 HES6Q96HZ4 224 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 TXLNGYQ9BZA5 131 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 RAB17Q9H0T7 212 aa12.46□□□□□ -0.41
CAPN9-202ENST00000354537 VAT1LQ9HCJ6 419 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms