RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 Q4G0T1 1027 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 C8orf74Q6P047 294 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 SND1Q7KZF4 910 aaKnown RBP eCLIP18.05■□□□□ 0.48
HOXD3-201ENST00000249440 RIN2Q8WYP3 895 aaPredicted RBP18.05■□□□□ 0.48
HOXD3-201ENST00000249440 HINFPQ9BQA5 517 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 TRAF3IP3Q9Y228 551 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 MMP10P09238 476 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 KCNA4P22459 653 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 SLC7A5Q01650 507 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 GIT2Q14161 759 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 EMBQ6PCB8 327 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 FRMD5Q7Z6J6 570 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 SYT2Q8N9I0 419 aaPredicted RBP18.05■□□□□ 0.48
HOXD3-201ENST00000249440 TRIM34Q9BYJ4 488 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 EHD2Q9NZN4 543 aa18.05■□□□□ 0.48
HOXD3-201ENST00000249440 SPDYE3A6NKU9 549 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 PALMO75781 387 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 FOSP01100 380 aaPredicted RBP18.04■□□□□ 0.48
HOXD3-201ENST00000249440 TNFRSF8P28908 595 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 ARID5AQ03989 594 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 TCP10Q12799 353 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 ASIC2Q16515 512 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 KNOP1Q1ED39 458 aaKnown RBP18.04■□□□□ 0.48
HOXD3-201ENST00000249440 KIAA0753Q2KHM9 967 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 PODNQ7Z5L7 613 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 FAM133AQ8N9E0 248 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 MRIQ9BWK5 157 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 RBM12Q9NTZ6 932 aaKnown RBP18.04■□□□□ 0.48
HOXD3-201ENST00000249440 STK32BQ9NY57 414 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 ADAMTS1Q9UHI8 967 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 SIPA1L1O43166 1804 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 A0A087X0T9 212 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 FAM228BP0C875 321 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 KLRC1P26715 233 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 APBA1Q02410 837 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 FAM20AQ96MK3 541 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 GANQ9H2C0 597 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 SMARCAL1Q9NZC9 954 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 ARMCX3Q9UH62 379 aaPredicted RBP18.04■□□□□ 0.48
HOXD3-201ENST00000249440 HDAC9Q9UKV0 1011 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 PCDHGC5Q9Y5F6 944 aa18.04■□□□□ 0.48
HOXD3-201ENST00000249440 DDTLA6NHG4 134 aaPredicted RBP18.03■□□□□ 0.48
HOXD3-201ENST00000249440 FAM196BA6NMK8 535 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 ICA1Q05084 483 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 C10orf76Q5T2E6 689 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 FBXO11Q86XK2 927 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 IDI2Q9BXS1 227 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 KIF13BQ9NQT8 1826 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 F5H6K3 240 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 PDXKO00764 312 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 CALUO43852 315 aaPredicted RBP18.03■□□□□ 0.48
HOXD3-201ENST00000249440 SPATA31C1P0DKV0 1188 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 CASP5P51878 434 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 CACNB3P54284 484 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 PSMC6P62333 389 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 KLRC3Q07444 240 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 PABPC4Q13310 644 aaKnown RBP eCLIP18.03■□□□□ 0.48
HOXD3-201ENST00000249440 TATDN1Q6P1N9 297 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 TMEM179Q6ZVK1 233 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 REEP2Q9BRK0 252 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 PLCB1Q9NQ66 1216 aa18.03■□□□□ 0.48
HOXD3-201ENST00000249440 BZW2Q9Y6E2 419 aaKnown RBP18.03■□□□□ 0.48
HOXD3-201ENST00000249440 GRID2IPA4D2P6 1211 aa18.02■□□□□ 0.48
HOXD3-201ENST00000249440 GOLGA6CA6NDK9 693 aa18.02■□□□□ 0.48
HOXD3-201ENST00000249440 AFPP02771 609 aaKnown RBP18.02■□□□□ 0.48
HOXD3-201ENST00000249440 GOLGA6DP0CG33 693 aa18.02■□□□□ 0.48
HOXD3-201ENST00000249440 SREBF1P36956 1147 aa18.02■□□□□ 0.48
HOXD3-201ENST00000249440 MEI1Q5TIA1 1274 aa18.02■□□□□ 0.48
HOXD3-201ENST00000249440 KIAA0825Q8IV33 1275 aa18.02■□□□□ 0.48
HOXD3-201ENST00000249440 IFT20Q8IY31 132 aa18.02■□□□□ 0.48
HOXD3-201ENST00000249440 FAM76AQ8TAV0 307 aa18.02■□□□□ 0.48
HOXD3-201ENST00000249440 MS4A14Q96JA4 679 aa18.02■□□□□ 0.48
HOXD3-201ENST00000249440 TSPYL1Q9H0U9 437 aa18.02■□□□□ 0.48
HOXD3-201ENST00000249440 GOLGA6AQ9NYA3 693 aa18.02■□□□□ 0.48
HOXD3-201ENST00000249440 MEIS1O00470 390 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 XRCC5P13010 732 aaKnown RBP18.01■□□□□ 0.47
HOXD3-201ENST00000249440 HMGB2P26583 209 aaKnown RBP18.01■□□□□ 0.47
HOXD3-201ENST00000249440 RBM5P52756 815 aaKnown RBP eCLIP18.01■□□□□ 0.47
HOXD3-201ENST00000249440 IRX5P78411 483 aaPredicted RBP18.01■□□□□ 0.47
HOXD3-201ENST00000249440 MRPS25P82663 173 aaKnown RBP18.01■□□□□ 0.47
HOXD3-201ENST00000249440 IKQ13123 557 aaPredicted RBP18.01■□□□□ 0.47
HOXD3-201ENST00000249440 SHROOM1Q2M3G4 852 aaPredicted RBP18.01■□□□□ 0.47
HOXD3-201ENST00000249440 LRRC31Q6UY01 552 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 EPM2AIP1Q7L775 607 aaPredicted RBP18.01■□□□□ 0.47
HOXD3-201ENST00000249440 SFR1Q86XK3 245 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 SIAH1Q8IUQ4 282 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 GMCL1P1Q8NEA9 526 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 CAVIN3Q969G5 261 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 LENG9Q96B70 501 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 TRERF1Q96PN7 1200 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 SPAG5Q96R06 1193 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 P2RX7Q99572 595 aaKnown RBP18.01■□□□□ 0.47
HOXD3-201ENST00000249440 BTNL10A8MVZ5 291 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 FAM86B1E9PN63 330 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 OPA1O60313 960 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 FTCDO95954 541 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 FAM86B2P0C5J1 330 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 PDE6BP35913 854 aa18.01■□□□□ 0.47
HOXD3-201ENST00000249440 ENOX2Q16206 610 aaKnown RBP18.01■□□□□ 0.47
HOXD3-201ENST00000249440 USH1GQ495M9 461 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms