RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	CSG2	P35206	410 aa		4.56	□□□□□ -1.68
RRP40	YOL142W	FYV8	P46949	817 aa	Known RBP	4.56	□□□□□ -1.68
RRP40	YOL142W	YDL186W	P48568	277 aa		4.56	□□□□□ -1.68
RRP40	YOL142W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
RRP40	YOL142W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
RRP40	YOL142W	TOF2	Q02208	771 aa		4.56	□□□□□ -1.68
RRP40	YOL142W	BNA5	Q05979	453 aa		4.56	□□□□□ -1.68
RRP40	YOL142W	YPR078C	Q06813	372 aa		4.56	□□□□□ -1.68
RRP40	YOL142W	SYO1	Q07395	620 aa		4.56	□□□□□ -1.68
RRP40	YOL142W	PLP2	Q12017	286 aa		4.56	□□□□□ -1.68
RRP40	YOL142W	SUC2	P00724	532 aa		4.55	□□□□□ -1.68
RRP40	YOL142W	CAR1	P00812	333 aa	Known RBP	4.55	□□□□□ -1.68
RRP40	YOL142W	RPS3	P05750	240 aa	Known RBP	4.55	□□□□□ -1.68
RRP40	YOL142W	GDH1	P07262	454 aa	Known RBP	4.55	□□□□□ -1.68
RRP40	YOL142W	SPO12	P17123	173 aa		4.55	□□□□□ -1.68
RRP40	YOL142W	BUD14	P27637	709 aa		4.55	□□□□□ -1.68
RRP40	YOL142W	NIP100	P33420	868 aa		4.55	□□□□□ -1.68
RRP40	YOL142W	TCD2	P36101	447 aa	Known RBP	4.55	□□□□□ -1.68
RRP40	YOL142W	YJL213W	P40896	331 aa		4.55	□□□□□ -1.68
RRP40	YOL142W	COS10	P52924	374 aa		4.55	□□□□□ -1.68
RRP40	YOL142W	YLR287C	Q05881	355 aa		4.55	□□□□□ -1.68
RRP40	YOL142W	THP1	Q08231	455 aa		4.55	□□□□□ -1.68
RRP40	YOL142W	YDL009C	Q12210	107 aa		4.55	□□□□□ -1.68
RRP40	YOL142W	RLM1	Q12224	676 aa		4.55	□□□□□ -1.68
RRP40	YOL142W	ATP1	P07251	545 aa	Known RBP	4.54	□□□□□ -1.68
RRP40	YOL142W	YCR007C	P25354	239 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	FRE1	P32791	686 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	MTC4	P38335	694 aa	Known RBP	4.54	□□□□□ -1.68
RRP40	YOL142W	MSR1	P38714	643 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	DSE1	P40077	573 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	SHQ1	P40486	507 aa	Predicted RBP	4.54	□□□□□ -1.68
RRP40	YOL142W	ALK1	P43633	760 aa	Known RBP	4.54	□□□□□ -1.68
RRP40	YOL142W	PHO86	P46956	311 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	AIM22	P47051	409 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	YJR054W	P47114	497 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	YGR066C	P53242	292 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	SLG1	P54867	378 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	ADA2	Q02336	434 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	MZM1	Q03429	123 aa	Predicted RBP	4.54	□□□□□ -1.68
RRP40	YOL142W	IVY1	Q04934	453 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	AYT1	Q12226	474 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	FAB1	P34756	2278 aa		4.54	□□□□□ -1.68
RRP40	YOL142W	CDC33	P07260	213 aa	Known RBP	4.53	□□□□□ -1.68
RRP40	YOL142W	CBS1	P14066	229 aa		4.53	□□□□□ -1.68
RRP40	YOL142W	MCK1	P21965	375 aa	Known RBP	4.53	□□□□□ -1.68
RRP40	YOL142W	VPS3	P23643	1011 aa		4.53	□□□□□ -1.68
RRP40	YOL142W	YCR022C	P25620	114 aa		4.53	□□□□□ -1.68
RRP40	YOL142W	CPR3	P25719	182 aa		4.53	□□□□□ -1.68
RRP40	YOL142W	AGA1	P32323	725 aa		4.53	□□□□□ -1.68
RRP40	YOL142W	VPH1	P32563	840 aa	Known RBP	4.53	□□□□□ -1.68
RRP40	YOL142W	MRP4	P32902	394 aa		4.53	□□□□□ -1.68
RRP40	YOL142W	KDX1	P36005	433 aa		4.53	□□□□□ -1.68
RRP40	YOL142W	SIF2	P38262	535 aa		4.53	□□□□□ -1.68
RRP40	YOL142W	YHR218W	P38899	603 aa		4.53	□□□□□ -1.68
RRP40	YOL142W	ROK1	P45818	564 aa	Predicted RBP	4.53	□□□□□ -1.68
RRP40	YOL142W	ASG7	P46993	209 aa		4.53	□□□□□ -1.68
RRP40	YOL142W	VPS38	Q05919	439 aa		4.53	□□□□□ -1.68
RRP40	YOL142W	MRPL51	Q06090	140 aa	Predicted RBP	4.53	□□□□□ -1.68
RRP40	YOL142W	HXT1	P32465	570 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	EFB1	P32471	206 aa	Known RBP	4.52	□□□□□ -1.69
RRP40	YOL142W	PCH2	P38126	564 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	DUG2	P38149	878 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	BNA4	P38169	460 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	TCM62	P38228	572 aa	Known RBP	4.52	□□□□□ -1.69
RRP40	YOL142W	YEL075C	P39972	122 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	MND1	P53102	219 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	ALF1	P53904	254 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	FIN1	Q03898	291 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	YDR222W	Q04925	415 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	PHO92	Q06390	306 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	TSR1	Q07381	788 aa	Known RBP	4.52	□□□□□ -1.69
RRP40	YOL142W	YDL121C	Q07541	149 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	SIL1	Q08199	421 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	AVL9	Q12500	764 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	BI3	Q9ZZW7	517 aa		4.52	□□□□□ -1.69
RRP40	YOL142W	RPL20A	P0CX23	172 aa	Known RBP	4.51	□□□□□ -1.69
RRP40	YOL142W	RPL20B	P0CX24	172 aa	Predicted RBP	4.51	□□□□□ -1.69
RRP40	YOL142W	RAD57	P25301	460 aa		4.51	□□□□□ -1.69
RRP40	YOL142W	TKL2	P33315	681 aa		4.51	□□□□□ -1.69
RRP40	YOL142W	MSN2	P33748	704 aa		4.51	□□□□□ -1.69
RRP40	YOL142W	JNM1	P36224	373 aa		4.51	□□□□□ -1.69
RRP40	YOL142W	SHE3	P38272	425 aa	Known RBP	4.51	□□□□□ -1.69
RRP40	YOL142W	SMC2	P38989	1170 aa	Known RBP	4.51	□□□□□ -1.69
RRP40	YOL142W	MMF1	P40185	145 aa	Known RBP	4.51	□□□□□ -1.69
RRP40	YOL142W	EFM4	P40516	257 aa		4.51	□□□□□ -1.69
RRP40	YOL142W	RBG2	P53295	368 aa	Known RBP	4.51	□□□□□ -1.69
RRP40	YOL142W	DIS3	Q08162	1001 aa	Known RBP	4.51	□□□□□ -1.69
RRP40	YOL142W	GPM2	Q12008	311 aa		4.51	□□□□□ -1.69
RRP40	YOL142W	VPS54	Q12071	889 aa		4.51	□□□□□ -1.69
RRP40	YOL142W	HEM2	P05373	342 aa		4.5	□□□□□ -1.69
RRP40	YOL142W	PRP2	P20095	876 aa	Predicted RBP	4.5	□□□□□ -1.69
RRP40	YOL142W	PAP1	P29468	568 aa	Known RBP	4.5	□□□□□ -1.69
RRP40	YOL142W	YME1	P32795	747 aa		4.5	□□□□□ -1.69
RRP40	YOL142W	WBP1	P33767	430 aa	Known RBP	4.5	□□□□□ -1.69
RRP40	YOL142W	PMU1	P36069	295 aa		4.5	□□□□□ -1.69
RRP40	YOL142W	YBR056W	P38081	501 aa		4.5	□□□□□ -1.69
RRP40	YOL142W	SRO77	P38163	1010 aa		4.5	□□□□□ -1.69
RRP40	YOL142W	FHL1	P39521	936 aa		4.5	□□□□□ -1.69
RRP40	YOL142W	YGR111W	P53265	400 aa		4.5	□□□□□ -1.69
RRP40	YOL142W	ARE2	P53629	642 aa	Known RBP	4.5	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 19.6 ms