RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W NRP1P32770 719 aaKnown RBP RIP-Chip data3.05□□□□□ -1.92not detected
UPF3YGR072W YBR056WP38081 501 aa3.05□□□□□ -1.92
UPF3YGR072W SIF2P38262 535 aa3.05□□□□□ -1.92
UPF3YGR072W HAT2P39984 401 aa3.05□□□□□ -1.92
UPF3YGR072W YER079WP40052 210 aaKnown RBP3.05□□□□□ -1.92
UPF3YGR072W YJL070CP40361 888 aa3.05□□□□□ -1.92
UPF3YGR072W CHS6P40955 746 aa3.05□□□□□ -1.92
UPF3YGR072W FYV8P46949 817 aaKnown RBP3.05□□□□□ -1.92
UPF3YGR072W RTT101P47050 842 aa3.05□□□□□ -1.92
UPF3YGR072W ROG1P53118 685 aa3.05□□□□□ -1.92
UPF3YGR072W POP6P53218 158 aa3.05□□□□□ -1.92
UPF3YGR072W YNR048WP53740 393 aa3.05□□□□□ -1.92
UPF3YGR072W CAF40P53829 373 aa3.05□□□□□ -1.92
UPF3YGR072W GPI15P53961 229 aa3.05□□□□□ -1.92
UPF3YGR072W URH1Q04179 340 aa3.05□□□□□ -1.92
UPF3YGR072W DBP9Q06218 594 aaKnown RBP3.05□□□□□ -1.92
UPF3YGR072W RSA1Q08932 381 aa3.05□□□□□ -1.92
UPF3YGR072W YPL199CQ08954 240 aa3.05□□□□□ -1.92
UPF3YGR072W ORT1Q12375 292 aa3.05□□□□□ -1.92
UPF3YGR072W RPL20AP0CX23 172 aaKnown RBP3.04□□□□□ -1.92
UPF3YGR072W RPL20BP0CX24 172 aaPredicted RBP3.04□□□□□ -1.92
UPF3YGR072W FAA1P30624 700 aaKnown RBP3.04□□□□□ -1.92
UPF3YGR072W YEL043WP32618 956 aa3.04□□□□□ -1.92
UPF3YGR072W ATP3P38077 311 aaKnown RBP3.04□□□□□ -1.92
UPF3YGR072W MNL1P38888 796 aa3.04□□□□□ -1.92
UPF3YGR072W YIL089WP40500 205 aa3.04□□□□□ -1.92
UPF3YGR072W LAM5P43560 674 aa3.04□□□□□ -1.92
UPF3YGR072W RPA34P47006 233 aaPredicted RBP3.04□□□□□ -1.92
UPF3YGR072W YIP5P53108 310 aa3.04□□□□□ -1.92
UPF3YGR072W ADA2Q02336 434 aa3.04□□□□□ -1.92
UPF3YGR072W PIR3Q03180 325 aa3.04□□□□□ -1.92
UPF3YGR072W ERP1Q05359 219 aaKnown RBP3.04□□□□□ -1.92
UPF3YGR072W IPK1Q06667 281 aa3.04□□□□□ -1.92
UPF3YGR072W YPR022CQ12139 1133 aa3.04□□□□□ -1.92
UPF3YGR072W NFT1P0CE68 1218 aa3.03□□□□□ -1.92
UPF3YGR072W DAP2P18962 818 aa3.03□□□□□ -1.92
UPF3YGR072W UBA1P22515 1024 aaKnown RBP3.03□□□□□ -1.92
UPF3YGR072W SLM5P25345 492 aaKnown RBP3.03□□□□□ -1.92
UPF3YGR072W PMU1P36069 295 aa3.03□□□□□ -1.92
UPF3YGR072W ADH5P38113 351 aaKnown RBP3.03□□□□□ -1.92
UPF3YGR072W MTC4P38335 694 aaKnown RBP3.03□□□□□ -1.92
UPF3YGR072W MMF1P40185 145 aaKnown RBP3.03□□□□□ -1.92
UPF3YGR072W AVT4P50944 713 aa3.03□□□□□ -1.92
UPF3YGR072W CUE3P53137 624 aaKnown RBP3.03□□□□□ -1.92
UPF3YGR072W AQR1P53943 586 aa3.03□□□□□ -1.92
UPF3YGR072W STD1Q02794 444 aa3.03□□□□□ -1.92
UPF3YGR072W HCR1Q05775 265 aaKnown RBP3.03□□□□□ -1.92
UPF3YGR072W RRP9Q06506 573 aaKnown RBP3.03□□□□□ -1.92
UPF3YGR072W DAP1Q12091 152 aa3.03□□□□□ -1.92
UPF3YGR072W CEX1Q12453 761 aa3.03□□□□□ -1.92
UPF3YGR072W SET6Q12529 373 aa3.03□□□□□ -1.92
UPF3YGR072W CHS1P08004 1131 aa3.02□□□□□ -1.93
UPF3YGR072W SAM1P10659 382 aaKnown RBP3.02□□□□□ -1.93
UPF3YGR072W TAL1P15019 335 aaKnown RBP3.02□□□□□ -1.93
UPF3YGR072W SAM2P19358 384 aaKnown RBP3.02□□□□□ -1.93
UPF3YGR072W SPS22P25380 463 aa3.02□□□□□ -1.93
UPF3YGR072W PRO3P32263 286 aaKnown RBP3.02□□□□□ -1.93
UPF3YGR072W YSC83P32792 385 aa3.02□□□□□ -1.93
UPF3YGR072W DOA1P36037 715 aa3.02□□□□□ -1.93
UPF3YGR072W QDR3P38227 689 aa3.02□□□□□ -1.93
UPF3YGR072W GPI16P38875 610 aa3.02□□□□□ -1.93
UPF3YGR072W MST28P39552 234 aa3.02□□□□□ -1.93
UPF3YGR072W PHB2P50085 310 aa3.02□□□□□ -1.93
UPF3YGR072W RTT102P53330 157 aa3.02□□□□□ -1.93
UPF3YGR072W IBD2P53892 351 aa3.02□□□□□ -1.93
UPF3YGR072W YMR181CQ03231 154 aa3.02□□□□□ -1.93
UPF3YGR072W MGR3Q04472 501 aa3.02□□□□□ -1.93
UPF3YGR072W AAD15Q08361 143 aa3.02□□□□□ -1.93
UPF3YGR072W RMD5Q12508 421 aa3.02□□□□□ -1.93
UPF3YGR072W RPL15AP05748 204 aaKnown RBP3.01□□□□□ -1.93
UPF3YGR072W ILV5P06168 395 aaKnown RBP3.01□□□□□ -1.93
UPF3YGR072W IMA3P0CW40 589 aa3.01□□□□□ -1.93
UPF3YGR072W IMA4P0CW41 589 aa3.01□□□□□ -1.93
UPF3YGR072W ARF1P11076 181 aaKnown RBP3.01□□□□□ -1.93
UPF3YGR072W PUT3P25502 979 aaPredicted RBP3.01□□□□□ -1.93
UPF3YGR072W RDS1P25611 832 aa3.01□□□□□ -1.93
UPF3YGR072W YCR022CP25620 114 aa3.01□□□□□ -1.93
UPF3YGR072W COX13P32799 129 aa3.01□□□□□ -1.93
UPF3YGR072W SKN1P33336 771 aa3.01□□□□□ -1.93
UPF3YGR072W SPT10P35208 640 aa3.01□□□□□ -1.93
UPF3YGR072W KKQ8P36004 724 aa3.01□□□□□ -1.93
UPF3YGR072W RIB5P38145 238 aa3.01□□□□□ -1.93
UPF3YGR072W YBP1P38315 674 aa3.01□□□□□ -1.93
UPF3YGR072W MDM31P38880 579 aa3.01□□□□□ -1.93
UPF3YGR072W RPH1P39956 796 aa3.01□□□□□ -1.93
UPF3YGR072W GCD10P41814 478 aa3.01□□□□□ -1.93
UPF3YGR072W MPS2P53159 387 aa3.01□□□□□ -1.93
UPF3YGR072W YNR068CP53754 272 aa3.01□□□□□ -1.93
UPF3YGR072W PRM1P53835 661 aa3.01□□□□□ -1.93
UPF3YGR072W PRP3Q03338 469 aaPredicted RBP3.01□□□□□ -1.93
UPF3YGR072W RRB1Q04225 511 aaKnown RBP3.01□□□□□ -1.93
UPF3YGR072W NDE2Q07500 545 aa3.01□□□□□ -1.93
UPF3YGR072W IMA2Q08295 589 aa3.01□□□□□ -1.93
UPF3YGR072W SRL2Q12020 392 aa3.01□□□□□ -1.93
UPF3YGR072W AYT1Q12226 474 aa3.01□□□□□ -1.93
UPF3YGR072W TPT1Q12272 230 aaKnown RBP3.01□□□□□ -1.93
UPF3YGR072W PSY3Q12318 242 aa3.01□□□□□ -1.93
UPF3YGR072W ATP1P07251 545 aaKnown RBP3□□□□□ -1.93
UPF3YGR072W MRS3P10566 314 aa3□□□□□ -1.93
UPF3YGR072W NAT2P37293 288 aa3□□□□□ -1.93
Retrieved 100 of 5,963 RNA–protein pairs in 28.1 ms