RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	ATF1	P40353	525 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	YIR016W	P40572	265 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	SCS3	P53012	380 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	RET3	P53600	189 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	NCS2	P53923	493 aa	Predicted RBP	4.57	□□□□□ -1.68
CAF16	YFL028C	YDR415C	Q04033	374 aa	Predicted RBP	4.57	□□□□□ -1.68
CAF16	YFL028C	AIM33	Q04516	312 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	YMR321C	Q04898	105 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	YLR456W	Q06199	204 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	RKM5	Q12367	367 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	ARP6	Q12509	438 aa		4.57	□□□□□ -1.68
CAF16	YFL028C	THR4	P16120	514 aa	Known RBP	4.56	□□□□□ -1.68
CAF16	YFL028C	GLK1	P17709	500 aa	Known RBP	4.56	□□□□□ -1.68
CAF16	YFL028C	MDM10	P18409	493 aa		4.56	□□□□□ -1.68
CAF16	YFL028C	RDS1	P25611	832 aa		4.56	□□□□□ -1.68
CAF16	YFL028C	YUR1	P26725	428 aa		4.56	□□□□□ -1.68
CAF16	YFL028C	MSP1	P28737	362 aa		4.56	□□□□□ -1.68
CAF16	YFL028C	LAS1	P36146	502 aa	Predicted RBP	4.56	□□□□□ -1.68
CAF16	YFL028C	GND1	P38720	489 aa	Known RBP	4.56	□□□□□ -1.68
CAF16	YFL028C	CCT2	P39076	527 aa	Known RBP	4.56	□□□□□ -1.68
CAF16	YFL028C	VHS2	P40463	436 aa		4.56	□□□□□ -1.68
CAF16	YFL028C	SAM50	P53969	484 aa		4.56	□□□□□ -1.68
CAF16	YFL028C	BET4	Q00618	327 aa		4.56	□□□□□ -1.68
CAF16	YFL028C	STP1	Q00947	519 aa		4.56	□□□□□ -1.68
CAF16	YFL028C	MEH1	Q02205	184 aa		4.56	□□□□□ -1.68
CAF16	YFL028C	MDM30	Q05930	598 aa		4.56	□□□□□ -1.68
CAF16	YFL028C	LSP1	Q12230	341 aa	Known RBP	4.56	□□□□□ -1.68
CAF16	YFL028C	ILV1	P00927	576 aa	Known RBP	4.55	□□□□□ -1.68
CAF16	YFL028C	PDE2	P06776	526 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	ARO3	P14843	370 aa	Known RBP	4.55	□□□□□ -1.68
CAF16	YFL028C	ALG1	P16661	449 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	SEC62	P21825	274 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	RPI1	P23250	407 aa	Known RBP	4.55	□□□□□ -1.68
CAF16	YFL028C	YCR007C	P25354	239 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	KRR1	P25586	316 aa	Predicted RBP	4.55	□□□□□ -1.68
CAF16	YFL028C	ACH1	P32316	526 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	FRE1	P32791	686 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	WSS1	P38838	269 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	SAS2	P40963	338 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	YIF1	P53845	314 aa	Known RBP	4.55	□□□□□ -1.68
CAF16	YFL028C	DSL1	P53847	754 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	TDA7	P53882	636 aa	Predicted RBP	4.55	□□□□□ -1.68
CAF16	YFL028C	PPM1	Q04081	328 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	HSP31	Q04432	237 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	CSM3	Q04659	317 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	TIP41	Q12199	356 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	SKS1	Q12505	502 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	NBL1	Q3E7Y6	73 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	TAO3	P40468	2376 aa		4.55	□□□□□ -1.68
CAF16	YFL028C	MOT1	P32333	1867 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	CAR1	P00812	333 aa	Known RBP	4.54	□□□□□ -1.68
CAF16	YFL028C	POX1	P13711	748 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	SEC63	P14906	663 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	GEX1	P25596	615 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	VPS17	P32913	551 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	ECM15	P35195	104 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	SOR1	P35497	357 aa	Known RBP	4.54	□□□□□ -1.68
CAF16	YFL028C	SPC34	P36131	295 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	EFM2	P38347	419 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	POP2	P39008	433 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	YER130C	P39959	443 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	PCL6	P40038	420 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	FAU1	P40099	211 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	HYR1	P40581	163 aa	Known RBP	4.54	□□□□□ -1.68
CAF16	YFL028C	AZF1	P41696	914 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	MDV1	P47025	714 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	TOM22	P49334	152 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	HST1	P53685	503 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	SEC5	P89102	971 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	YDR387C	Q04162	555 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	YMR087W	Q04299	284 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	MRPL1	Q04599	285 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	SOR2	Q07786	357 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	THI20	Q08224	551 aa		4.54	□□□□□ -1.68
CAF16	YFL028C	RKM1	Q08961	583 aa	Predicted RBP	4.54	□□□□□ -1.68
CAF16	YFL028C	PMR1	P13586	950 aa		4.53	□□□□□ -1.68
CAF16	YFL028C	FRS2	P15625	503 aa	Known RBP	4.53	□□□□□ -1.68
CAF16	YFL028C	PTP1	P25044	335 aa		4.53	□□□□□ -1.68
CAF16	YFL028C	YCP4	P25349	247 aa	Known RBP	4.53	□□□□□ -1.68
CAF16	YFL028C	BUB3	P26449	341 aa		4.53	□□□□□ -1.68
CAF16	YFL028C	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected
CAF16	YFL028C	RIM1	P32445	135 aa	Known RBP	4.53	□□□□□ -1.68
CAF16	YFL028C	APE2	P32454	952 aa	Known RBP	4.53	□□□□□ -1.68
CAF16	YFL028C	IME2	P32581	645 aa		4.53	□□□□□ -1.68
CAF16	YFL028C	TOA1	P32773	286 aa		4.53	□□□□□ -1.68
CAF16	YFL028C	MIC60	P36112	540 aa		4.53	□□□□□ -1.68
CAF16	YFL028C	ASC1	P38011	319 aa	Known RBP	4.53	□□□□□ -1.68
CAF16	YFL028C	RRN10	P38204	145 aa		4.53	□□□□□ -1.68
CAF16	YFL028C	RFT1	P38206	574 aa	Predicted RBP	4.53	□□□□□ -1.68
CAF16	YFL028C	RFC3	P38629	340 aa		4.53	□□□□□ -1.68
CAF16	YFL028C	VPS52	P39904	641 aa		4.53	□□□□□ -1.68
CAF16	YFL028C	BNA3	P47039	444 aa	Known RBP	4.53	□□□□□ -1.68
CAF16	YFL028C	TOF1	P53840	1238 aa		4.53	□□□□□ -1.68
CAF16	YFL028C	RTC4	P53850	401 aa		4.53	□□□□□ -1.68
CAF16	YFL028C	YLH47	Q06493	454 aa		4.53	□□□□□ -1.68
CAF16	YFL028C	HIS4	P00815	799 aa	Known RBP	4.52	□□□□□ -1.69
CAF16	YFL028C	SCEI	P03882	235 aa		4.52	□□□□□ -1.69
CAF16	YFL028C	RPL6B	P05739	176 aa	Known RBP	4.52	□□□□□ -1.69
CAF16	YFL028C	MAS2	P11914	482 aa		4.52	□□□□□ -1.69
CAF16	YFL028C	TRX1	P22217	103 aa	Known RBP	4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 729.4 ms