RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 HSCBQ8IWL3 235 aa20.62■□□□□ 0.89
CLN3-243ENST00000635973 C7orf31Q8N865 590 aa20.62■□□□□ 0.89
CLN3-243ENST00000635973 C8orf76Q96K31 380 aa20.62■□□□□ 0.89
CLN3-243ENST00000635973 FTOQ9C0B1 505 aaKnown RBP eCLIP20.62■□□□□ 0.89
CLN3-243ENST00000635973 TANC1Q9C0D5 1861 aa20.61■□□□□ 0.89
CLN3-243ENST00000635973 FIBPO43427 364 aa20.61■□□□□ 0.89
CLN3-243ENST00000635973 KRT2P35908 639 aa20.61■□□□□ 0.89
CLN3-243ENST00000635973 PPTC7Q8NI37 304 aa20.61■□□□□ 0.89
CLN3-243ENST00000635973 EMID1Q96A84 441 aaPredicted RBP20.61■□□□□ 0.89
CLN3-243ENST00000635973 INPP4AQ96PE3 977 aaPredicted RBP20.61■□□□□ 0.89
CLN3-243ENST00000635973 SMC3Q9UQE7 1217 aa20.61■□□□□ 0.89
CLN3-243ENST00000635973 EYSQ5T1H1 3165 aa20.6■□□□□ 0.89
CLN3-243ENST00000635973 CCDC194A0A1B0GVG4 234 aa20.6■□□□□ 0.89
CLN3-243ENST00000635973 K7ELQ4 463 aaPredicted RBP20.6■□□□□ 0.89
CLN3-243ENST00000635973 IQCF3P0C7M6 154 aa20.6■□□□□ 0.89
CLN3-243ENST00000635973 GUCY1B3Q02153 619 aa20.6■□□□□ 0.89
CLN3-243ENST00000635973 SAFBQ15424 915 aaKnown RBP eCLIP20.6■□□□□ 0.89
CLN3-243ENST00000635973 KRT40Q6A162 431 aa20.6■□□□□ 0.89
CLN3-243ENST00000635973 KRT25Q7Z3Z0 450 aa20.6■□□□□ 0.89
CLN3-243ENST00000635973 CDHR1Q96JP9 859 aa20.6■□□□□ 0.89
CLN3-243ENST00000635973 NKX2-4Q9H2Z4 354 aa20.6■□□□□ 0.89
CLN3-243ENST00000635973 MYO9BQ13459 2157 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 SORBS3O60504 671 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 RGS20O76081 388 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 MMP1P03956 469 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 TGFB3P10600 412 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 ATP2A2P16615 1042 aaKnown RBP20.59■□□□□ 0.89
CLN3-243ENST00000635973 PSEN2P49810 448 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 MTMR1Q13613 665 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 NPY5RQ15761 445 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 SESTD1Q86VW0 696 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 CAGE1Q8TC20 777 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 GPRASP2Q96D09 838 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 SPATA33Q96N06 139 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 MLXIPQ9HAP2 919 aa20.59■□□□□ 0.89
CLN3-243ENST00000635973 PPFIA4O75335 1185 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 GGPS1O95749 300 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 ZNF286BP0CG31 522 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 GJB2P29033 226 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 ICAM3P32942 547 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 RABGGTBP53611 331 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 MFSD10Q14728 455 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 NONOQ15233 471 aaKnown RBP eCLIP20.58■□□□□ 0.89
CLN3-243ENST00000635973 KIAA0753Q2KHM9 967 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 CEP55Q53EZ4 464 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 CELF3Q5SZQ8 465 aaKnown RBP20.58■□□□□ 0.89
CLN3-243ENST00000635973 GDF6Q6KF10 455 aaPredicted RBP20.58■□□□□ 0.89
CLN3-243ENST00000635973 OXER1Q8TDS5 423 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 TBCKQ8TEA7 893 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 AFAP1L1Q8TED9 768 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 KAT2BQ92831 832 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 SNX21Q969T3 373 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 MXRA8Q9BRK3 442 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 PRDM12Q9H4Q4 367 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 UBIAD1Q9Y5Z9 338 aa20.58■□□□□ 0.89
CLN3-243ENST00000635973 VCANP13611 3396 aa20.58■□□□□ 0.88
CLN3-243ENST00000635973 SPATA31C2B4DYI2 1134 aa20.57■□□□□ 0.88
CLN3-243ENST00000635973 ITGB5P18084 799 aa20.57■□□□□ 0.88
CLN3-243ENST00000635973 UBA1P22314 1058 aaKnown RBP20.57■□□□□ 0.88
CLN3-243ENST00000635973 GNL2Q13823 731 aaKnown RBP20.57■□□□□ 0.88
CLN3-243ENST00000635973 MYSM1Q5VVJ2 828 aa20.57■□□□□ 0.88
CLN3-243ENST00000635973 PPP2R2DQ66LE6 453 aa20.57■□□□□ 0.88
CLN3-243ENST00000635973 DIS3L2Q8IYB7 885 aaKnown RBP20.57■□□□□ 0.88
CLN3-243ENST00000635973 JADE2Q9NQC1 790 aa20.57■□□□□ 0.88
CLN3-243ENST00000635973 PKD2L1Q9P0L9 805 aa20.57■□□□□ 0.88
CLN3-243ENST00000635973 HDAC6Q9UBN7 1215 aa20.57■□□□□ 0.88
CLN3-243ENST00000635973 GTF2IRD1Q9UHL9 959 aa20.57■□□□□ 0.88
CLN3-243ENST00000635973 PCDHA11Q9Y5I1 949 aa20.57■□□□□ 0.88
CLN3-243ENST00000635973 M0R2N6 131 aa20.56■□□□□ 0.88
CLN3-243ENST00000635973 NOP56O00567 594 aaKnown RBP20.56■□□□□ 0.88
CLN3-243ENST00000635973 CYP3A4P08684 503 aa20.56■□□□□ 0.88
CLN3-243ENST00000635973 IGFBP4P22692 258 aa20.56■□□□□ 0.88
CLN3-243ENST00000635973 CUL4AQ13619 759 aa20.56■□□□□ 0.88
CLN3-243ENST00000635973 NEDD9Q14511 834 aa20.56■□□□□ 0.88
CLN3-243ENST00000635973 PIK3AP1Q6ZUJ8 805 aa20.56■□□□□ 0.88
CLN3-243ENST00000635973 PPM1EQ8WY54 764 aa20.56■□□□□ 0.88
CLN3-243ENST00000635973 SLC9A7Q96T83 725 aa20.56■□□□□ 0.88
CLN3-243ENST00000635973 YBX2Q9Y2T7 364 aaKnown RBP20.56■□□□□ 0.88
CLN3-243ENST00000635973 KIF28PB7ZC32 967 aa20.55■□□□□ 0.88
CLN3-243ENST00000635973 PARNO95453 639 aaKnown RBP20.55■□□□□ 0.88
CLN3-243ENST00000635973 F2P00734 622 aa20.55■□□□□ 0.88
CLN3-243ENST00000635973 SELPP16109 830 aa20.55■□□□□ 0.88
CLN3-243ENST00000635973 KCNJ6P48051 423 aa20.55■□□□□ 0.88
CLN3-243ENST00000635973 SETQ01105 290 aaPredicted RBP20.55■□□□□ 0.88
CLN3-243ENST00000635973 SEMA3FQ13275 785 aa20.55■□□□□ 0.88
CLN3-243ENST00000635973 NR5A1Q13285 461 aa20.55■□□□□ 0.88
CLN3-243ENST00000635973 INF2Q27J81 1249 aa20.55■□□□□ 0.88
CLN3-243ENST00000635973 HSDL1Q3SXM5 330 aa20.55■□□□□ 0.88
CLN3-243ENST00000635973 LRRC8DQ7L1W4 858 aa20.55■□□□□ 0.88
CLN3-243ENST00000635973 PLA2G4DQ86XP0 818 aa20.55■□□□□ 0.88
CLN3-243ENST00000635973 GIMAP8Q8ND71 665 aaPredicted RBP20.55■□□□□ 0.88
CLN3-243ENST00000635973 FBXO18Q8NFZ0 1043 aa20.55■□□□□ 0.88
CLN3-243ENST00000635973 CYP2W1Q8TAV3 490 aa20.55■□□□□ 0.88
CLN3-243ENST00000635973 SPTBN5Q9NRC6 3674 aaKnown RBP20.55■□□□□ 0.88
CLN3-243ENST00000635973 BTBD18B2RXH4 712 aa20.54■□□□□ 0.88
CLN3-243ENST00000635973 H3BQV1 296 aa20.54■□□□□ 0.88
CLN3-243ENST00000635973 MAFGO15525 162 aa20.54■□□□□ 0.88
CLN3-243ENST00000635973 HSP90AA1P07900 732 aaKnown RBP20.54■□□□□ 0.88
CLN3-243ENST00000635973 USP11P51784 963 aa20.54■□□□□ 0.88
CLN3-243ENST00000635973 SP2Q02086 613 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms