RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 MTA3Q9BTC8 594 aa27.37■■□□□ 1.97
CPSF1-214ENST00000622776 NRCAMQ92823 1304 aa27.37■■□□□ 1.97
CPSF1-214ENST00000622776 PRC1O43663 620 aa27.36■■□□□ 1.97
CPSF1-214ENST00000622776 PLEKHA8P1O95397 391 aa27.36■■□□□ 1.97
CPSF1-214ENST00000622776 KCNA5P22460 613 aa27.36■■□□□ 1.97
CPSF1-214ENST00000622776 PTPROQ16827 1216 aa27.36■■□□□ 1.97
CPSF1-214ENST00000622776 SRBD1Q8N5C6 995 aaKnown RBP27.36■■□□□ 1.97
CPSF1-214ENST00000622776 KHSRPQ92945 711 aaKnown RBP eCLIP27.36■■□□□ 1.97
CPSF1-214ENST00000622776 LRFN3Q9BTN0 628 aa27.36■■□□□ 1.97
CPSF1-214ENST00000622776 IFIH1Q9BYX4 1025 aaKnown RBP27.36■■□□□ 1.97
CPSF1-214ENST00000622776 NFXL1Q6ZNB6 911 aa27.35■■□□□ 1.97
CPSF1-214ENST00000622776 TMTC2Q8N394 836 aa27.35■■□□□ 1.97
CPSF1-214ENST00000622776 GPRASP2Q96D09 838 aa27.35■■□□□ 1.97
CPSF1-214ENST00000622776 CD320Q9NPF0 282 aa27.35■■□□□ 1.97
CPSF1-214ENST00000622776 H3BNC9 293 aa27.34■■□□□ 1.97
CPSF1-214ENST00000622776 ATP9AO75110 1047 aa27.34■■□□□ 1.97
CPSF1-214ENST00000622776 TCF7P36402 384 aaPredicted RBP27.34■■□□□ 1.97
CPSF1-214ENST00000622776 GPM6BQ13491 265 aa27.34■■□□□ 1.97
CPSF1-214ENST00000622776 TMEM192Q8IY95 271 aa27.34■■□□□ 1.97
CPSF1-214ENST00000622776 GADD45GIP1Q8TAE8 222 aaPredicted RBP27.34■■□□□ 1.97
CPSF1-214ENST00000622776 CDHR1Q96JP9 859 aa27.34■■□□□ 1.97
CPSF1-214ENST00000622776 PSTPIP2Q9H939 334 aa27.34■■□□□ 1.97
CPSF1-214ENST00000622776 SH2B2O14492 632 aaPredicted RBP27.33■■□□□ 1.97
CPSF1-214ENST00000622776 CHRNA1P02708 482 aa27.33■■□□□ 1.97
CPSF1-214ENST00000622776 KCNA2P16389 499 aa27.33■■□□□ 1.97
CPSF1-214ENST00000622776 MCM5P33992 734 aa27.33■■□□□ 1.97
CPSF1-214ENST00000622776 PLA2G5P39877 138 aa27.33■■□□□ 1.97
CPSF1-214ENST00000622776 TMEM31Q5JXX7 168 aa27.33■■□□□ 1.97
CPSF1-214ENST00000622776 RPAINQ86UA6 219 aa27.33■■□□□ 1.97
CPSF1-214ENST00000622776 CMTR1Q8N1G2 835 aaKnown RBP27.33■■□□□ 1.97
CPSF1-214ENST00000622776 TMEM87BQ96K49 555 aa27.33■■□□□ 1.97
CPSF1-214ENST00000622776 CCDC69A6NI79 296 aa27.32■■□□□ 1.96
CPSF1-214ENST00000622776 ITGB5P18084 799 aa27.32■■□□□ 1.96
CPSF1-214ENST00000622776 RXRAP19793 462 aa27.32■■□□□ 1.96
CPSF1-214ENST00000622776 PPFIA1Q13136 1202 aa27.32■■□□□ 1.96
CPSF1-214ENST00000622776 TIGD5Q53EQ6 642 aa27.32■■□□□ 1.96
CPSF1-214ENST00000622776 TAF2Q6P1X5 1199 aa27.32■■□□□ 1.96
CPSF1-214ENST00000622776 RUFY4Q6ZNE9 571 aa27.32■■□□□ 1.96
CPSF1-214ENST00000622776 SEPT1Q8WYJ6 367 aa27.32■■□□□ 1.96
CPSF1-214ENST00000622776 FAM122AQ96E09 287 aa27.32■■□□□ 1.96
CPSF1-214ENST00000622776 COL4A6Q14031 1691 aa27.31■■□□□ 1.96
CPSF1-214ENST00000622776 GSTTP1A0A1W2PQM5 241 aa27.31■■□□□ 1.96
CPSF1-214ENST00000622776 GHRP10912 638 aa27.31■■□□□ 1.96
CPSF1-214ENST00000622776 COL9A3Q14050 684 aaPredicted RBP27.31■■□□□ 1.96
CPSF1-214ENST00000622776 FAM178BQ8IXR5 827 aa27.31■■□□□ 1.96
CPSF1-214ENST00000622776 BANK1Q8NDB2 785 aa27.31■■□□□ 1.96
CPSF1-214ENST00000622776 IL17RAQ96F46 866 aa27.31■■□□□ 1.96
CPSF1-214ENST00000622776 EHMT1Q9H9B1 1298 aa27.31■■□□□ 1.96
CPSF1-214ENST00000622776 CALM1P0DP23 149 aa27.3■■□□□ 1.96
CPSF1-214ENST00000622776 CALM2P0DP24 149 aa27.3■■□□□ 1.96
CPSF1-214ENST00000622776 CALM3P0DP25 149 aa27.3■■□□□ 1.96
CPSF1-214ENST00000622776 LIFRP42702 1097 aa27.3■■□□□ 1.96
CPSF1-214ENST00000622776 UBE2SQ16763 222 aa27.3■■□□□ 1.96
CPSF1-214ENST00000622776 PTCRAQ6ISU1 281 aaPredicted RBP27.3■■□□□ 1.96
CPSF1-214ENST00000622776 RSPH3Q86UC2 560 aa27.3■■□□□ 1.96
CPSF1-214ENST00000622776 LSG1Q9H089 658 aaKnown RBP27.3■■□□□ 1.96
CPSF1-214ENST00000622776 ERAP1Q9NZ08 941 aa27.3■■□□□ 1.96
CPSF1-214ENST00000622776 UBIAD1Q9Y5Z9 338 aa27.3■■□□□ 1.96
CPSF1-214ENST00000622776 hCG_1642624A0A1W2PR95 340 aa27.29■■□□□ 1.96
CPSF1-214ENST00000622776 IL9P15248 144 aa27.29■■□□□ 1.96
CPSF1-214ENST00000622776 MARK3P27448 753 aa27.29■■□□□ 1.96
CPSF1-214ENST00000622776 MGAT3Q09327 533 aa27.29■■□□□ 1.96
CPSF1-214ENST00000622776 GRIK4Q16099 956 aa27.29■■□□□ 1.96
CPSF1-214ENST00000622776 GJD3Q8N144 294 aa27.29■■□□□ 1.96
CPSF1-214ENST00000622776 FIBCD1Q8N539 461 aa27.29■■□□□ 1.96
CPSF1-214ENST00000622776 NEK9Q8TD19 979 aa27.29■■□□□ 1.96
CPSF1-214ENST00000622776 PKD2L1Q9P0L9 805 aa27.29■■□□□ 1.96
CPSF1-214ENST00000622776 GRXCR2A6NFK2 248 aa27.28■■□□□ 1.96
CPSF1-214ENST00000622776 SPDYE3A6NKU9 549 aa27.28■■□□□ 1.96
CPSF1-214ENST00000622776 PI4K2BG5E9Z4 385 aa27.28■■□□□ 1.96
CPSF1-214ENST00000622776 GPR37L1O60883 481 aa27.28■■□□□ 1.96
CPSF1-214ENST00000622776 MTMR1Q13613 665 aa27.28■■□□□ 1.96
CPSF1-214ENST00000622776 LPIN1Q14693 890 aa27.28■■□□□ 1.96
CPSF1-214ENST00000622776 TCEAL5Q5H9L2 206 aa27.28■■□□□ 1.96
CPSF1-214ENST00000622776 RAB11FIP4Q86YS3 637 aa27.28■■□□□ 1.96
CPSF1-214ENST00000622776 GLG1Q92896 1179 aa27.28■■□□□ 1.96
CPSF1-214ENST00000622776 SMARCAD1Q9H4L7 1026 aa27.28■■□□□ 1.96
CPSF1-214ENST00000622776 C11orf16Q9NQ32 467 aa27.28■■□□□ 1.96
CPSF1-214ENST00000622776 TUBE1Q9UJT0 475 aa27.28■■□□□ 1.96
CPSF1-214ENST00000622776 MBLAC1A4D2B0 266 aaPredicted RBP27.27■■□□□ 1.96
CPSF1-214ENST00000622776 SLC27A2O14975 620 aa27.27■■□□□ 1.96
CPSF1-214ENST00000622776 PUS10Q3MIT2 529 aaKnown RBP27.27■■□□□ 1.96
CPSF1-214ENST00000622776 MARCH8Q5T0T0 291 aa27.27■■□□□ 1.96
CPSF1-214ENST00000622776 CCDC82Q8N4S0 544 aa27.27■■□□□ 1.96
CPSF1-214ENST00000622776 DNAJB3Q8WWF6 145 aa27.27■■□□□ 1.96
CPSF1-214ENST00000622776 NSUN3Q9H649 340 aaKnown RBP27.27■■□□□ 1.96
CPSF1-214ENST00000622776 JADE2Q9NQC1 790 aa27.27■■□□□ 1.96
CPSF1-214ENST00000622776 PCDHA6Q9UN73 950 aa27.27■■□□□ 1.96
CPSF1-214ENST00000622776 PCDHA8Q9Y5H6 950 aa27.27■■□□□ 1.96
CPSF1-214ENST00000622776 SLC12A7Q9Y666 1083 aa27.27■■□□□ 1.96
CPSF1-214ENST00000622776 NLRC5Q86WI3 1866 aa27.27■■□□□ 1.96
CPSF1-214ENST00000622776 MUC6Q6W4X9 2439 aa27.27■■□□□ 1.96
CPSF1-214ENST00000622776 H3BQ06 376 aaPredicted RBP27.26■■□□□ 1.95
CPSF1-214ENST00000622776 ENPP3O14638 875 aa27.26■■□□□ 1.95
CPSF1-214ENST00000622776 MAFGO15525 162 aa27.26■■□□□ 1.95
CPSF1-214ENST00000622776 CTNNB1P35222 781 aa27.26■■□□□ 1.95
CPSF1-214ENST00000622776 IRX6P78412 446 aaPredicted RBP27.26■■□□□ 1.95
CPSF1-214ENST00000622776 TMTC3Q6ZXV5 915 aa27.26■■□□□ 1.95
CPSF1-214ENST00000622776 FANCBQ8NB91 859 aa27.26■■□□□ 1.95
CPSF1-214ENST00000622776 PABPC5Q96DU9 382 aaKnown RBP27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms