RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 MESDQ14696 234 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 NTRK3Q16288 839 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 GRIK5Q16478 980 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 KCTD16Q68DU8 428 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 MCTP2Q6DN12 878 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 BBXQ8WY36 941 aaPredicted RBP9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 ACCSQ96QU6 501 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 CRAMP1Q96RY5 1269 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 PACSIN2Q9UNF0 486 aaPredicted RBP9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 HNRNPDLO14979 420 aaKnown RBP9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 GAP43P17677 238 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 PRELPP51888 382 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 FKBP3Q00688 224 aaKnown RBP9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 PAK2Q13177 524 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 PSMD2Q13200 908 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 PRAMEF18Q5VWM3 479 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 CCDC91Q7Z6B0 441 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 CERKQ8TCT0 537 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 NACC1Q96RE7 527 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 JMJD4Q9H9V9 463 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 ABCB6Q9NP58 842 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 RGL1Q9NZL6 768 aa9.76□□□□□ -0.85
PDLIM5-222ENST00000615540 SERPING1P05155 500 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 VPS41P49754 854 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 PODNQ7Z5L7 613 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 RTFDC1Q9BY42 306 aaPredicted RBP9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 TUBE1Q9UJT0 475 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 ACTN2P35609 894 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 SNX1Q13596 522 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 CAPN12Q6ZSI9 719 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 EIF2AK1Q9BQI3 630 aaKnown RBP9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 MTA3Q9BTC8 594 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 PPP1R3GB7ZBB8 358 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 PSMD14O00487 310 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 CA8P35219 290 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 PEX3P56589 373 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 ZNF543Q08ER8 600 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 SEC23AQ15436 765 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 COL23A1Q86Y22 540 aaPredicted RBP9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 SPATA31A6Q5VVP1 1343 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 PALMO75781 387 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 MIS18BP1Q6P0N0 1132 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 RNF207Q6ZRF8 634 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 SESTD1Q86VW0 696 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 NAP1L3Q99457 506 aaPredicted RBP9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 IL17RBQ9NRM6 502 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 SALL1Q9NSC2 1324 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 ZNF185O15231 689 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 DKC1O60832 514 aaKnown RBP eCLIP9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 AP3B2Q13367 1082 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 PPP1R18Q6NYC8 613 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 DCUN1D2Q6PH85 259 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 SPZ1Q9BXG8 430 aa9.75□□□□□ -0.85
PDLIM5-222ENST00000615540 LRRC63Q05C16 580 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 TROAPQ12815 778 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 MTMR1Q13613 665 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 CHP1Q99653 195 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 METTL14Q9HCE5 456 aaKnown RBP9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 CHD2O14647 1828 aaKnown RBP9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 MYMKA6NI61 221 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 ATP1A1P05023 1023 aaKnown RBP9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 CTNNA1P35221 906 aaKnown RBP9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 CEP85LQ5SZL2 805 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 CPLX4Q7Z7G2 160 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 CDAN1Q8IWY9 1227 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 RABGGTAQ92696 567 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 C1orf112Q9NSG2 853 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 PIM2Q9P1W9 311 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 PCDHB4Q9Y5E5 795 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 RGPD5Q99666 1765 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 SLC16A4O15374 487 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 NR3C1P04150 777 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 USP14P54578 494 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 NR1I3Q14994 352 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 EZH2Q15910 746 aaKnown RBP9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 NFRKBQ6P4R8 1299 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 ZNF668Q96K58 619 aaPredicted RBP9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 EPB41L5Q9HCM4 733 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 ST7Q9NRC1 585 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 FEM1BQ9UK73 627 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 A0A1B0GTH6 734 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 MYCP01106 439 aaPredicted RBP9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 GOLGA5Q8TBA6 731 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 A0A087X0B3 334 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 MYBP10242 640 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 TRIM6Q9C030 488 aaPredicted RBP9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 TMEM39BQ9GZU3 492 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 AGPAT5Q9NUQ2 364 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 ADGRG1Q9Y653 693 aa9.74□□□□□ -0.85
PDLIM5-222ENST00000615540 SCARA5Q6ZMJ2 495 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 FMNL3Q8IVF7 1028 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 SULF1Q8IWU6 871 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 WRNIP1Q96S55 665 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 WDR11Q9BZH6 1224 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 FAN1Q9Y2M0 1017 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 IVNS1ABPQ9Y6Y0 642 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 GPR75-ASB3A0A0A6YYF3 556 aa9.73□□□□□ -0.85
PDLIM5-222ENST00000615540 E7EVH7 732 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms