RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 HOXC8P31273 242 aa21.94■■□□□ 1.1
SS18-208ENST00000577751 KRT2P35908 639 aa21.94■■□□□ 1.1
SS18-208ENST00000577751 HMGN5P82970 282 aaKnown RBP21.94■■□□□ 1.1
SS18-208ENST00000577751 PTGISQ16647 500 aa21.94■■□□□ 1.1
SS18-208ENST00000577751 Q4G0T1 1027 aa21.94■■□□□ 1.1
SS18-208ENST00000577751 UTP14CQ5TAP6 766 aaKnown RBP21.94■■□□□ 1.1
SS18-208ENST00000577751 TRIM50Q86XT4 487 aa21.94■■□□□ 1.1
SS18-208ENST00000577751 TMX3Q96JJ7 454 aa21.94■■□□□ 1.1
SS18-208ENST00000577751 ZNF577Q9BSK1 485 aa21.94■■□□□ 1.1
SS18-208ENST00000577751 HIPK3Q9H422 1215 aa21.94■■□□□ 1.1
SS18-208ENST00000577751 TBC1D22BQ9NU19 505 aa21.94■■□□□ 1.1
SS18-208ENST00000577751 CCDC194A0A1B0GVG4 234 aa21.93■■□□□ 1.1
SS18-208ENST00000577751 CYP2C9P11712 490 aa21.93■■□□□ 1.1
SS18-208ENST00000577751 ACTR2P61160 394 aa21.93■■□□□ 1.1
SS18-208ENST00000577751 HIC1Q14526 733 aa21.93■■□□□ 1.1
SS18-208ENST00000577751 TRIP12Q14669 1992 aaPredicted RBP21.93■■□□□ 1.1
SS18-208ENST00000577751 INF2Q27J81 1249 aa21.93■■□□□ 1.1
SS18-208ENST00000577751 EARS2Q5JPH6 523 aaKnown RBP21.93■■□□□ 1.1
SS18-208ENST00000577751 KRT40Q6A162 431 aa21.93■■□□□ 1.1
SS18-208ENST00000577751 EMSYQ7Z589 1322 aa21.93■■□□□ 1.1
SS18-208ENST00000577751 PCYT2Q99447 389 aa21.93■■□□□ 1.1
SS18-208ENST00000577751 PPP1R12CQ9BZL4 782 aa21.93■■□□□ 1.1
SS18-208ENST00000577751 ZNF215Q9UL58 517 aaPredicted RBP21.93■■□□□ 1.1
SS18-208ENST00000577751 UMODL1Q5DID0 1318 aa21.92■■□□□ 1.1
SS18-208ENST00000577751 MSH4O15457 936 aa21.92■■□□□ 1.1
SS18-208ENST00000577751 TDP2O95551 362 aa21.92■■□□□ 1.1
SS18-208ENST00000577751 CCNE2O96020 404 aa21.92■■□□□ 1.1
SS18-208ENST00000577751 CYP2C18P33260 490 aa21.92■■□□□ 1.1
SS18-208ENST00000577751 NR5A1Q13285 461 aa21.92■■□□□ 1.1
SS18-208ENST00000577751 TRIM29Q14134 588 aa21.92■■□□□ 1.1
SS18-208ENST00000577751 TDHQ8IZJ6 230 aa21.92■■□□□ 1.1
SS18-208ENST00000577751 SMARCAD1Q9H4L7 1026 aa21.92■■□□□ 1.1
SS18-208ENST00000577751 BRMS1Q9HCU9 246 aa21.92■■□□□ 1.1
SS18-208ENST00000577751 IGKV6D-21A0A0A0MT36 114 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 BTBD18B2RXH4 712 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 SMIM10L2AP0DMW4 78 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 SMIM10L2BP0DMW5 78 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 FPGSQ05932 587 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 ABHD15Q6UXT9 468 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 PIK3AP1Q6ZUJ8 805 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 NEK8Q86SG6 692 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 DIS3L2Q8IYB7 885 aaKnown RBP21.91■■□□□ 1.1
SS18-208ENST00000577751 TMEM199Q8N511 208 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 SLC5A5Q92911 643 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 UIMC1Q96RL1 719 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 WNT8AQ9H1J5 351 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 RNPEPQ9H4A4 650 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 ERAP1Q9NZ08 941 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 NOD1Q9Y239 953 aa21.91■■□□□ 1.1
SS18-208ENST00000577751 DDX39AO00148 427 aaKnown RBP21.9■■□□□ 1.1
SS18-208ENST00000577751 PITPNM1O00562 1244 aa21.9■■□□□ 1.1
SS18-208ENST00000577751 EPHB4P54760 987 aa21.9■■□□□ 1.1
SS18-208ENST00000577751 PPP4R3AQ6IN85 833 aa21.9■■□□□ 1.1
SS18-208ENST00000577751 ZNF746Q6NUN9 644 aaPredicted RBP21.9■■□□□ 1.1
SS18-208ENST00000577751 C8orf76Q96K31 380 aa21.9■■□□□ 1.1
SS18-208ENST00000577751 RIT2Q99578 217 aa21.9■■□□□ 1.1
SS18-208ENST00000577751 CSF2RAP15509 400 aa21.89■■□□□ 1.09
SS18-208ENST00000577751 FOSBP53539 338 aa21.89■■□□□ 1.09
SS18-208ENST00000577751 ADAM17P78536 824 aa21.89■■□□□ 1.09
SS18-208ENST00000577751 ZNF200P98182 395 aaPredicted RBP21.89■■□□□ 1.09
SS18-208ENST00000577751 RBL2Q08999 1139 aa21.89■■□□□ 1.09
SS18-208ENST00000577751 PTK7Q13308 1070 aa21.89■■□□□ 1.09
SS18-208ENST00000577751 LETM2Q2VYF4 491 aa21.89■■□□□ 1.09
SS18-208ENST00000577751 PLPPR4Q7Z2D5 763 aa21.89■■□□□ 1.09
SS18-208ENST00000577751 FAM184AQ8NB25 1140 aa21.89■■□□□ 1.09
SS18-208ENST00000577751 FBXO18Q8NFZ0 1043 aa21.89■■□□□ 1.09
SS18-208ENST00000577751 DHX38Q92620 1227 aaKnown RBP21.89■■□□□ 1.09
SS18-208ENST00000577751 GLG1Q92896 1179 aa21.89■■□□□ 1.09
SS18-208ENST00000577751 TRIOBPQ9H2D6 2365 aa21.89■■□□□ 1.09
SS18-208ENST00000577751 KAT6AQ92794 2004 aa21.89■■□□□ 1.09
SS18-208ENST00000577751 WDR81Q562E7 1941 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 NRCAMQ92823 1304 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 C17orf102A2RUQ5 167 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 FAM205CA6NFA0 338 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 GCFC2P16383 781 aaKnown RBP21.88■■□□□ 1.09
SS18-208ENST00000577751 STAT5BP51692 787 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 CCL23P55773 120 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 KRT76Q01546 638 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 PPIGQ13427 754 aaKnown RBP eCLIP21.88■■□□□ 1.09
SS18-208ENST00000577751 BFSP2Q13515 415 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 C16orf59Q7L2K0 433 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 SMAP1Q8IYB5 467 aaPredicted RBP21.88■■□□□ 1.09
SS18-208ENST00000577751 ETNPPLQ8TBG4 499 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 CAGE1Q8TC20 777 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 AFAP1L1Q8TED9 768 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 NAP1L4Q99733 375 aaKnown RBP21.88■■□□□ 1.09
SS18-208ENST00000577751 AZI2Q9H6S1 392 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 DDX25Q9UHL0 483 aaKnown RBP21.88■■□□□ 1.09
SS18-208ENST00000577751 TANC1Q9C0D5 1861 aa21.88■■□□□ 1.09
SS18-208ENST00000577751 SLC37A4O43826 429 aa21.87■■□□□ 1.09
SS18-208ENST00000577751 PSMD10O75832 226 aa21.87■■□□□ 1.09
SS18-208ENST00000577751 GNAT1P11488 350 aa21.87■■□□□ 1.09
SS18-208ENST00000577751 SLC26A2P50443 739 aa21.87■■□□□ 1.09
SS18-208ENST00000577751 GUCY1B3Q02153 619 aa21.87■■□□□ 1.09
SS18-208ENST00000577751 SHHQ15465 462 aa21.87■■□□□ 1.09
SS18-208ENST00000577751 TRIM71Q2Q1W2 868 aaKnown RBP21.87■■□□□ 1.09
SS18-208ENST00000577751 C9orf50Q5SZB4 431 aa21.87■■□□□ 1.09
SS18-208ENST00000577751 SERINC5Q86VE9 423 aa21.87■■□□□ 1.09
SS18-208ENST00000577751 SETD4Q9NVD3 440 aa21.87■■□□□ 1.09
SS18-208ENST00000577751 TREHO43280 583 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms