RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 SLC12A8A0AV02 714 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 ZBTB48P10074 688 aaPredicted RBP6.84□□□□□ -1.31
NUP88-208ENST00000574087 FAHP16930 419 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 PTPN1P18031 435 aaKnown RBP6.84□□□□□ -1.31
NUP88-208ENST00000574087 RAP1GAPP47736 663 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 LIMS1P48059 325 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 MASP1P48740 699 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 NEK4P51957 841 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 PCBP1Q15365 356 aaKnown RBP eCLIP6.84□□□□□ -1.31
NUP88-208ENST00000574087 ZNF124Q15973 351 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 BTBD8Q5XKL5 378 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 FSTL4Q6MZW2 842 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 ZC3H18Q86VM9 953 aaKnown RBP6.84□□□□□ -1.31
NUP88-208ENST00000574087 FAM129CQ86XR2 697 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 KIF18BQ86Y91 864 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 THNSL2Q86YJ6 484 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 CILP2Q8IUL8 1156 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 PPM1KQ8N3J5 372 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 SYT3Q9BQG1 590 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 YIPF4Q9BSR8 244 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 B4GALT6Q9UBX8 382 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 WASF3Q9UPY6 502 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 FAN1Q9Y2M0 1017 aa6.84□□□□□ -1.31
NUP88-208ENST00000574087 PDE8AO60658 829 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 KPNA6O60684 536 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 CYP2C8P10632 490 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 YBX3P16989 372 aaKnown RBP eCLIP6.83□□□□□ -1.32
NUP88-208ENST00000574087 GJA4P35212 333 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 NKX3-2P78367 333 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 SEC23AQ15436 765 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 KCNA10Q16322 511 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 PKN1Q16512 942 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 ARHGAP44Q17R89 818 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 EP400NLQ6ZTU2 488 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 RNF180Q86T96 592 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 PROSER1Q86XN7 944 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 AHI1Q8N157 1196 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 DLG3Q92796 817 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 DDX11Q96FC9 970 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 PCDH18Q9HCL0 1135 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 CABP5Q9NP86 173 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 CNOT6Q9ULM6 557 aaKnown RBP6.83□□□□□ -1.32
NUP88-208ENST00000574087 MAPRE3Q9UPY8 281 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 PRKAB1Q9Y478 270 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 KCTD3Q9Y597 815 aa6.83□□□□□ -1.32
NUP88-208ENST00000574087 SCDO00767 359 aa6.82□□□□□ -1.32
NUP88-208ENST00000574087 C4BPAP04003 597 aaKnown RBP6.82□□□□□ -1.32
NUP88-208ENST00000574087 PLA2G1BP04054 148 aaKnown RBP6.82□□□□□ -1.32
NUP88-208ENST00000574087 PI3P19957 117 aa6.82□□□□□ -1.32
NUP88-208ENST00000574087 LINC00310P59036 64 aa6.82□□□□□ -1.32
NUP88-208ENST00000574087 HTRA3P83110 453 aa6.82□□□□□ -1.32
NUP88-208ENST00000574087 SEPT7Q16181 437 aaKnown RBP6.82□□□□□ -1.32
NUP88-208ENST00000574087 CPZQ66K79 652 aa6.82□□□□□ -1.32
NUP88-208ENST00000574087 PKN3Q6P5Z2 889 aa6.82□□□□□ -1.32
NUP88-208ENST00000574087 NOX5Q96PH1 765 aa6.82□□□□□ -1.32
NUP88-208ENST00000574087 GORASP1Q9BQQ3 440 aa6.82□□□□□ -1.32
NUP88-208ENST00000574087 KRTAP4-8Q9BYQ9 185 aa6.82□□□□□ -1.32
NUP88-208ENST00000574087 RIC8BQ9NVN3 520 aa6.82□□□□□ -1.32
NUP88-208ENST00000574087 B3GALT1Q9Y5Z6 326 aa6.82□□□□□ -1.32
NUP88-208ENST00000574087 PTPDC1A2A3K4 754 aa6.81□□□□□ -1.32
NUP88-208ENST00000574087 NPIPB6E9PJ23 425 aa6.81□□□□□ -1.32
NUP88-208ENST00000574087 F2P00734 622 aa6.81□□□□□ -1.32
NUP88-208ENST00000574087 IRF9Q00978 393 aa6.81□□□□□ -1.32
NUP88-208ENST00000574087 CNKSR3Q6P9H4 555 aa6.81□□□□□ -1.32
NUP88-208ENST00000574087 ZNF662Q6ZS27 426 aa6.81□□□□□ -1.32
NUP88-208ENST00000574087 LINC00482Q8N8I6 264 aa6.81□□□□□ -1.32
NUP88-208ENST00000574087 BOCQ9BWV1 1114 aa6.81□□□□□ -1.32
NUP88-208ENST00000574087 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.8□□□□□ -1.32
NUP88-208ENST00000574087 DVL2O14641 736 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 VIL1P09327 827 aaKnown RBP6.8□□□□□ -1.32
NUP88-208ENST00000574087 STAT3P40763 770 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 ITGA1P56199 1179 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 CAP1Q01518 475 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 DSG1Q02413 1049 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 ZNF385BQ569K4 471 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 CD276Q5ZPR3 534 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 CREB3L3Q68CJ9 461 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 FNIP1Q8TF40 1166 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 DACT3Q96B18 629 aaPredicted RBP6.8□□□□□ -1.32
NUP88-208ENST00000574087 C11orf84Q9BUA3 381 aaPredicted RBP6.8□□□□□ -1.32
NUP88-208ENST00000574087 TMX1Q9H3N1 280 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 KCNH7Q9NS40 1196 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 RBPJLQ9UBG7 517 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.8□□□□□ -1.32
NUP88-208ENST00000574087 PMF1-BGLAPU3KQ54 211 aa6.8□□□□□ -1.32
NUP88-208ENST00000574087 SHROOM4Q9ULL8 1493 aa6.79□□□□□ -1.32
NUP88-208ENST00000574087 ZNF891A8MT65 544 aaPredicted RBP6.79□□□□□ -1.32
NUP88-208ENST00000574087 SDHAP31040 664 aa6.79□□□□□ -1.32
NUP88-208ENST00000574087 THBS2P35442 1172 aa6.79□□□□□ -1.32
NUP88-208ENST00000574087 HERVK_113P62684 666 aa6.79□□□□□ -1.32
NUP88-208ENST00000574087 DBPQ10586 325 aaPredicted RBP6.79□□□□□ -1.32
NUP88-208ENST00000574087 ADAM9Q13443 819 aa6.79□□□□□ -1.32
NUP88-208ENST00000574087 SKOR2Q2VWA4 1001 aaPredicted RBP6.79□□□□□ -1.32
NUP88-208ENST00000574087 LIPIQ6XZB0 460 aa6.79□□□□□ -1.32
NUP88-208ENST00000574087 KRT26Q7Z3Y9 468 aa6.79□□□□□ -1.32
NUP88-208ENST00000574087 NXPE1Q8N323 547 aa6.79□□□□□ -1.32
NUP88-208ENST00000574087 KYQ8NBH2 561 aa6.79□□□□□ -1.32
NUP88-208ENST00000574087 PWWP2AQ96N64 755 aa6.79□□□□□ -1.32
NUP88-208ENST00000574087 CAAP1Q9H8G2 361 aa6.79□□□□□ -1.32
NUP88-208ENST00000574087 RFXAPO00287 272 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms