RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 MYO1AQ9UBC5 1043 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 PCDHA13Q9Y5I0 950 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 MYH8P13535 1937 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 MAST2Q6P0Q8 1798 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 FAM86B1E9PN63 330 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 H3BQF6 201 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 C21orf2O43822 256 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 ERLIN1O75477 346 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 RAD17O75943 681 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 PRPF6O94906 941 aaKnown RBP9.67□□□□□ -0.86
LINC00558-201ENST00000569422 FAM86B2P0C5J1 330 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 MAGEA1P43355 309 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 FKBP3Q00688 224 aaKnown RBP9.67□□□□□ -0.86
LINC00558-201ENST00000569422 SLC20A2Q08357 652 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 MTA1Q13330 715 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 RAPGEF1Q13905 1077 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 MIGA2Q7L4E1 593 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 ANKRD23Q86SG2 305 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 CATSPER3Q86XQ3 398 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 RETREG2Q8NC44 543 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 BORCS6Q96GS4 357 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 AMNQ9BXJ7 453 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 IKZF4Q9H2S9 585 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 VEZTQ9HBM0 779 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 VPS18Q9P253 973 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 SIK3Q9Y2K2 1263 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.67□□□□□ -0.86
LINC00558-201ENST00000569422 COL4A3BPQ9Y5P4 624 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 A0A1W2PRG0 241 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 RSPH10B2B2RC85 870 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 EIF3CLB5ME19 914 aaKnown RBP9.67□□□□□ -0.86
LINC00558-201ENST00000569422 USO1O60763 962 aaKnown RBP9.67□□□□□ -0.86
LINC00558-201ENST00000569422 RSPH10BP0C881 870 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 CYP11B2P19099 503 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 PPP1R2P41236 205 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 LRRC63Q05C16 580 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 RRP1BQ14684 758 aaKnown RBP9.67□□□□□ -0.86
LINC00558-201ENST00000569422 BRD3Q15059 726 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 DCAF17Q5H9S7 520 aaPredicted RBP9.67□□□□□ -0.86
LINC00558-201ENST00000569422 DACT2Q5SW24 774 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 BEND6Q5SZJ8 279 aaPredicted RBP9.67□□□□□ -0.86
LINC00558-201ENST00000569422 TRAPPC11Q7Z392 1133 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 ATL2Q8NHH9 583 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 TRERF1Q96PN7 1200 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 EIF3CQ99613 913 aaKnown RBP9.67□□□□□ -0.86
LINC00558-201ENST00000569422 LRRC27Q9C0I9 530 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 NT5C3AQ9H0P0 336 aa9.67□□□□□ -0.86
LINC00558-201ENST00000569422 PDE2AO00408 941 aaPredicted RBP9.66□□□□□ -0.86
LINC00558-201ENST00000569422 PSMD14O00487 310 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 ZBTB39O15060 712 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 CLIC2O15247 247 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 PPIP5K2O43314 1243 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 ACTN1P12814 892 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 VAV2P52735 878 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 KCNMA1Q12791 1236 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 SKIDA1Q1XH10 827 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 NFRKBQ6P4R8 1299 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 CCDC170Q8IYT3 715 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 BHMT2Q9H2M3 363 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 DHX36Q9H2U1 1008 aaKnown RBP9.66□□□□□ -0.86
LINC00558-201ENST00000569422 PLAGL2Q9UPG8 496 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 ZBTB12Q9Y330 459 aaPredicted RBP9.66□□□□□ -0.86
LINC00558-201ENST00000569422 PLIN4Q96Q06 1357 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 BMP3P12645 472 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 ORC2Q13416 577 aaPredicted RBP9.66□□□□□ -0.86
LINC00558-201ENST00000569422 IRF5Q13568 498 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 CTTNQ14247 550 aaKnown RBP9.66□□□□□ -0.86
LINC00558-201ENST00000569422 ARSHQ5FYA8 562 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 STRIP1Q5VSL9 837 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 PPP1R18Q6NYC8 613 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 ACER1Q8TDN7 264 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 SCFD1Q8WVM8 642 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 MKL1Q969V6 931 aa9.66□□□□□ -0.86
LINC00558-201ENST00000569422 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.66□□□□□ -0.86
LINC00558-201ENST00000569422 ATF5Q9Y2D1 282 aaPredicted RBP9.66□□□□□ -0.86
LINC00558-201ENST00000569422 UNCXA6NJT0 531 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 GCFC2P16383 781 aaKnown RBP9.65□□□□□ -0.86
LINC00558-201ENST00000569422 NR2F2P24468 414 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 SLC7A5Q01650 507 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 KCNA1Q09470 495 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 PLS1Q14651 629 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 SYDE2Q5VT97 1194 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 MAEAQ7L5Y9 396 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 HDXQ7Z353 690 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 SFR1Q86XK3 245 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 KSR1Q8IVT5 923 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 TPH2Q8IWU9 490 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 FAM133AQ8N9E0 248 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 COG1Q8WTW3 980 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 SALL4Q9UJQ4 1053 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 DNM3Q9UQ16 869 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 MYH1P12882 1939 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 ZNF831Q5JPB2 1677 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 DDX39AO00148 427 aaKnown RBP9.65□□□□□ -0.86
LINC00558-201ENST00000569422 TACC1O75410 805 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 MYBP10242 640 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 LMAN1P49257 510 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 EZH2Q15910 746 aaKnown RBP9.65□□□□□ -0.86
LINC00558-201ENST00000569422 FAM83BQ5T0W9 1011 aa9.65□□□□□ -0.86
LINC00558-201ENST00000569422 TMEM179Q6ZVK1 233 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms