RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 RXRAP19793 462 aa17.17■□□□□ 0.34
CLN3-236ENST00000568558 LIFRP42702 1097 aa17.17■□□□□ 0.34
CLN3-236ENST00000568558 GIMAP8Q8ND71 665 aaPredicted RBP17.17■□□□□ 0.34
CLN3-236ENST00000568558 GPRASP2Q96D09 838 aa17.17■□□□□ 0.34
CLN3-236ENST00000568558 C17orf80Q9BSJ5 609 aa17.17■□□□□ 0.34
CLN3-236ENST00000568558 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.16■□□□□ 0.34
CLN3-236ENST00000568558 ATP9AO75110 1047 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 CALM1P0DP23 149 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 CALM2P0DP24 149 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 CALM3P0DP25 149 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 KCNA2P16389 499 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 TCF7P36402 384 aaPredicted RBP17.16■□□□□ 0.34
CLN3-236ENST00000568558 ARHGAP4P98171 946 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 FAM26DQ5JW98 314 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 FBXO22Q8NEZ5 403 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 TOP1MTQ969P6 601 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 CDHR1Q96JP9 859 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 ESYT1Q9BSJ8 1104 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 PSTPIP2Q9H939 334 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 NRCAMQ92823 1304 aa17.16■□□□□ 0.34
CLN3-236ENST00000568558 ITGB5P18084 799 aa17.15■□□□□ 0.34
CLN3-236ENST00000568558 CREB3L3Q68CJ9 461 aa17.15■□□□□ 0.34
CLN3-236ENST00000568558 RAB11FIP4Q86YS3 637 aa17.15■□□□□ 0.34
CLN3-236ENST00000568558 APBB2Q92870 758 aa17.15■□□□□ 0.34
CLN3-236ENST00000568558 SAMD11Q96NU1 681 aa17.15■□□□□ 0.34
CLN3-236ENST00000568558 KIAA1671Q9BY89 1806 aa17.14■□□□□ 0.34
CLN3-236ENST00000568558 GSTTP1A0A1W2PQM5 241 aa17.14■□□□□ 0.33
CLN3-236ENST00000568558 hCG_1642624A0A1W2PR95 340 aa17.14■□□□□ 0.33
CLN3-236ENST00000568558 NECTIN1Q15223 517 aa17.14■□□□□ 0.33
CLN3-236ENST00000568558 UBE2SQ16763 222 aa17.14■□□□□ 0.33
CLN3-236ENST00000568558 TMTC3Q6ZXV5 915 aa17.14■□□□□ 0.33
CLN3-236ENST00000568558 YME1L1Q96TA2 773 aa17.14■□□□□ 0.33
CLN3-236ENST00000568558 LRRC2Q9BYS8 371 aa17.14■□□□□ 0.33
CLN3-236ENST00000568558 IFIH1Q9BYX4 1025 aaKnown RBP17.14■□□□□ 0.33
CLN3-236ENST00000568558 UBE2ZQ9H832 354 aaPredicted RBP17.14■□□□□ 0.33
CLN3-236ENST00000568558 UBIAD1Q9Y5Z9 338 aa17.14■□□□□ 0.33
CLN3-236ENST00000568558 SLC12A7Q9Y666 1083 aa17.14■□□□□ 0.33
CLN3-236ENST00000568558 TTC3P53804 2025 aa17.14■□□□□ 0.33
CLN3-236ENST00000568558 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.13■□□□□ 0.33
CLN3-236ENST00000568558 SPDYE3A6NKU9 549 aa17.13■□□□□ 0.33
CLN3-236ENST00000568558 UPP2O95045 317 aa17.13■□□□□ 0.33
CLN3-236ENST00000568558 PPFIA1Q13136 1202 aa17.13■□□□□ 0.33
CLN3-236ENST00000568558 EPC2Q52LR7 807 aa17.13■□□□□ 0.33
CLN3-236ENST00000568558 TAF2Q6P1X5 1199 aa17.13■□□□□ 0.33
CLN3-236ENST00000568558 RUFY4Q6ZNE9 571 aa17.13■□□□□ 0.33
CLN3-236ENST00000568558 RPAINQ86UA6 219 aa17.13■□□□□ 0.33
CLN3-236ENST00000568558 CCDC82Q8N4S0 544 aa17.13■□□□□ 0.33
CLN3-236ENST00000568558 FANCBQ8NB91 859 aa17.13■□□□□ 0.33
CLN3-236ENST00000568558 SEPT1Q8WYJ6 367 aa17.13■□□□□ 0.33
CLN3-236ENST00000568558 C1QTNF1Q9BXJ1 281 aa17.13■□□□□ 0.33
CLN3-236ENST00000568558 RAPGEFL1Q9UHV5 662 aa17.13■□□□□ 0.33
CLN3-236ENST00000568558 CHRNA1P02708 482 aa17.12■□□□□ 0.33
CLN3-236ENST00000568558 MGAT3Q09327 533 aa17.12■□□□□ 0.33
CLN3-236ENST00000568558 MTMR1Q13613 665 aa17.12■□□□□ 0.33
CLN3-236ENST00000568558 SGMS1Q86VZ5 419 aa17.12■□□□□ 0.33
CLN3-236ENST00000568558 MICU3Q86XE3 530 aa17.12■□□□□ 0.33
CLN3-236ENST00000568558 MRPL38Q96DV4 380 aaKnown RBP17.12■□□□□ 0.33
CLN3-236ENST00000568558 EHMT1Q9H9B1 1298 aa17.12■□□□□ 0.33
CLN3-236ENST00000568558 ANO2Q9NQ90 1003 aa17.12■□□□□ 0.33
CLN3-236ENST00000568558 ERAP1Q9NZ08 941 aa17.12■□□□□ 0.33
CLN3-236ENST00000568558 PKD2L1Q9P0L9 805 aa17.12■□□□□ 0.33
CLN3-236ENST00000568558 PCDHA6Q9UN73 950 aa17.12■□□□□ 0.33
CLN3-236ENST00000568558 PCDHA8Q9Y5H6 950 aa17.12■□□□□ 0.33
CLN3-236ENST00000568558 H3BNC9 293 aa17.11■□□□□ 0.33
CLN3-236ENST00000568558 MARK3P27448 753 aa17.11■□□□□ 0.33
CLN3-236ENST00000568558 GRIK4Q16099 956 aa17.11■□□□□ 0.33
CLN3-236ENST00000568558 PTPROQ16827 1216 aa17.11■□□□□ 0.33
CLN3-236ENST00000568558 HEATR3Q7Z4Q2 680 aa17.11■□□□□ 0.33
CLN3-236ENST00000568558 TMEM192Q8IY95 271 aa17.11■□□□□ 0.33
CLN3-236ENST00000568558 SMARCAD1Q9H4L7 1026 aa17.11■□□□□ 0.33
CLN3-236ENST00000568558 JADE2Q9NQC1 790 aa17.11■□□□□ 0.33
CLN3-236ENST00000568558 TUBE1Q9UJT0 475 aa17.11■□□□□ 0.33
CLN3-236ENST00000568558 CNTNAP5Q8WYK1 1306 aa17.11■□□□□ 0.33
CLN3-236ENST00000568558 MYO7AQ13402 2215 aa17.11■□□□□ 0.33
CLN3-236ENST00000568558 WDR81Q562E7 1941 aa17.1■□□□□ 0.33
CLN3-236ENST00000568558 MBLAC1A4D2B0 266 aaPredicted RBP17.1■□□□□ 0.33
CLN3-236ENST00000568558 MAFGO15525 162 aa17.1■□□□□ 0.33
CLN3-236ENST00000568558 GHRP10912 638 aa17.1■□□□□ 0.33
CLN3-236ENST00000568558 GPM6BQ13491 265 aa17.1■□□□□ 0.33
CLN3-236ENST00000568558 LPIN1Q14693 890 aa17.1■□□□□ 0.33
CLN3-236ENST00000568558 LEXMQ3ZCV2 418 aa17.1■□□□□ 0.33
CLN3-236ENST00000568558 TIGD5Q53EQ6 642 aa17.1■□□□□ 0.33
CLN3-236ENST00000568558 MARCH8Q5T0T0 291 aa17.1■□□□□ 0.33
CLN3-236ENST00000568558 RSPH3Q86UC2 560 aa17.1■□□□□ 0.33
CLN3-236ENST00000568558 GLG1Q92896 1179 aa17.1■□□□□ 0.33
CLN3-236ENST00000568558 EPHX3Q9H6B9 360 aa17.1■□□□□ 0.33
CLN3-236ENST00000568558 KCNA5P22460 613 aa17.09■□□□□ 0.33
CLN3-236ENST00000568558 FBXO47Q5MNV8 452 aa17.09■□□□□ 0.33
CLN3-236ENST00000568558 WWC2Q6AWC2 1192 aa17.09■□□□□ 0.33
CLN3-236ENST00000568558 APOA5Q6Q788 366 aa17.09■□□□□ 0.33
CLN3-236ENST00000568558 SYNE3Q6ZMZ3 975 aa17.09■□□□□ 0.33
CLN3-236ENST00000568558 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.09■□□□□ 0.33
CLN3-236ENST00000568558 DNAJB3Q8WWF6 145 aa17.09■□□□□ 0.33
CLN3-236ENST00000568558 RC3H2Q9HBD1 1191 aaKnown RBP17.09■□□□□ 0.33
CLN3-236ENST00000568558 JPH1Q9HDC5 661 aaPredicted RBP17.09■□□□□ 0.33
CLN3-236ENST00000568558 MYH9P35579 1960 aaKnown RBP17.09■□□□□ 0.33
CLN3-236ENST00000568558 EVPLQ92817 2033 aa17.09■□□□□ 0.33
CLN3-236ENST00000568558 RNF20Q5VTR2 975 aa17.08■□□□□ 0.32
CLN3-236ENST00000568558 TYW1BQ6NUM6 668 aa17.08■□□□□ 0.32
CLN3-236ENST00000568558 FIBCD1Q8N539 461 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms