RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 RBSNQ9H1K0 784 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 SHPRHQ149N8 1683 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 DENND3A2RUS2 1198 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 PPFIA1Q13136 1202 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 PTPN14Q15678 1187 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 MAPK6Q16659 721 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 GPT2Q8TD30 523 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 RNF34Q969K3 372 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 MOV10L1Q9BXT6 1211 aaKnown RBP10.16□□□□□ -0.78
VPS39-205ENST00000562258 JADE2Q9NQC1 790 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 GH1P01241 217 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 PPP1R2P41236 205 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 PSMC5P62195 406 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 ERVK-9P63128 1117 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 ERVK-24P63145 666 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 ARL6IP4Q66PJ3 421 aaKnown RBP10.16□□□□□ -0.78
VPS39-205ENST00000562258 PPP1R18Q6NYC8 613 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 HPS3Q969F9 1004 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 GMCL1Q96IK5 515 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 MROH8Q9H579 483 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 ZSCAN12O43309 604 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 USP2O75604 605 aaPredicted RBP10.15□□□□□ -0.78
VPS39-205ENST00000562258 TNNC2P02585 160 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 GNG11P61952 73 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 SP3Q02447 781 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 DPCR1Q3MIW9 517 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 TREML2Q5T2D2 321 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 KCPQ6ZWJ8 1503 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 A0A1W2PQ27 194 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 A0A1W2PQ64 194 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 A0A1W2PQD8 194 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 EIF3JO75822 258 aaKnown RBP10.15□□□□□ -0.78
VPS39-205ENST00000562258 MAPK4P31152 587 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 CYLC1P35663 651 aaPredicted RBP10.15□□□□□ -0.78
VPS39-205ENST00000562258 TNNT3P45378 269 aaPredicted RBP10.15□□□□□ -0.78
VPS39-205ENST00000562258 CUL4BQ13620 913 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 SFR1Q86XK3 245 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 DPF3Q92784 378 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 PHF20Q9BVI0 1012 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 LZTFL1Q9NQ48 299 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 PFASO15067 1338 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 COL16A1Q07092 1604 aaPredicted RBP10.15□□□□□ -0.78
VPS39-205ENST00000562258 SDK1Q7Z5N4 2213 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 ARP10275 920 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 TNFAIP3P21580 790 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 TERF1P54274 439 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 GSDMDP57764 484 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 PLCB3Q01970 1234 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 SH3BP5LQ7L8J4 393 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 ZMYND12Q9H0C1 365 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 GINM1Q9NU53 330 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 STK17AQ9UEE5 414 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 POLIQ9UNA4 740 aa10.15□□□□□ -0.78
VPS39-205ENST00000562258 H0YCG3 227 aa10.15□□□□□ -0.79
VPS39-205ENST00000562258 TOMM70O94826 608 aa10.15□□□□□ -0.79
VPS39-205ENST00000562258 RNASE9P60153 205 aaKnown RBP10.15□□□□□ -0.79
VPS39-205ENST00000562258 PPIL2Q13356 520 aa10.15□□□□□ -0.79
VPS39-205ENST00000562258 HSP90AA2PQ14568 343 aaPredicted RBP10.15□□□□□ -0.79
VPS39-205ENST00000562258 SMC1AQ14683 1233 aaKnown RBP10.15□□□□□ -0.79
VPS39-205ENST00000562258 MUM1L1Q5H9M0 696 aa10.15□□□□□ -0.79
VPS39-205ENST00000562258 GJC2Q5T442 439 aaPredicted RBP10.15□□□□□ -0.79
VPS39-205ENST00000562258 SYTL5Q8TDW5 730 aaPredicted RBP10.15□□□□□ -0.79
VPS39-205ENST00000562258 AFG1LQ8WV93 481 aa10.15□□□□□ -0.79
VPS39-205ENST00000562258 ATP6V0A4Q9HBG4 840 aa10.15□□□□□ -0.79
VPS39-205ENST00000562258 A1CFQ9NQ94 594 aaKnown RBP10.15□□□□□ -0.79
VPS39-205ENST00000562258 FAM184BQ9ULE4 1060 aa10.15□□□□□ -0.79
VPS39-205ENST00000562258 KLRG2A4D1S0 409 aaPredicted RBP10.14□□□□□ -0.79
VPS39-205ENST00000562258 CLDN3O15551 220 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 SFNP31947 248 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 PTGER2P43116 358 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 MORC3Q14149 939 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 TAF3Q5VWG9 929 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 RRAGAQ7L523 313 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 MCPH1Q8NEM0 835 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 ZNF384Q8TF68 577 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 FAM167AQ96KS9 214 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 MXRA8Q9BRK3 442 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 GUCA1BQ9UMX6 200 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 AGTPBP1Q9UPW5 1226 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 FOXN1O15353 648 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 CYTH3O43739 400 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 CSDE1O75534 798 aaKnown RBP10.14□□□□□ -0.79
VPS39-205ENST00000562258 SKIV2LQ15477 1246 aaKnown RBP10.14□□□□□ -0.79
VPS39-205ENST00000562258 TKFCQ3LXA3 575 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 RNF180Q86T96 592 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 CCDC112Q8NEF3 446 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 PAGE5Q96GU1 130 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 RUFY1Q96T51 708 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 MED10Q9BTT4 135 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 MSTO1Q9BUK6 570 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 LMO7Q8WWI1 1683 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 RFX1P22670 979 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 HIRAP54198 1017 aaPredicted RBP10.14□□□□□ -0.79
VPS39-205ENST00000562258 LY6KQ17RY6 165 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.14□□□□□ -0.79
VPS39-205ENST00000562258 TRIM50Q86XT4 487 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 PDCD2LQ9BRP1 358 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 CENPHQ9H3R5 247 aa10.14□□□□□ -0.79
VPS39-205ENST00000562258 NPHP3-ACAD11A0A0J9YXS1 232 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 ESPNB1AK53 854 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms