RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 H3BRB1 525 aa21.85■■□□□ 1.09
VPS35-202ENST00000561713 NOP56O00567 594 aaKnown RBP21.85■■□□□ 1.09
VPS35-202ENST00000561713 MEIS2O14770 477 aa21.85■■□□□ 1.09
VPS35-202ENST00000561713 TREHO43280 583 aa21.85■■□□□ 1.09
VPS35-202ENST00000561713 SMIM10L2AP0DMW4 78 aa21.85■■□□□ 1.09
VPS35-202ENST00000561713 SMIM10L2BP0DMW5 78 aa21.85■■□□□ 1.09
VPS35-202ENST00000561713 TGFB3P10600 412 aa21.85■■□□□ 1.09
VPS35-202ENST00000561713 HOXC8P31273 242 aa21.85■■□□□ 1.09
VPS35-202ENST00000561713 CENPQQ7L2Z9 268 aaPredicted RBP21.85■■□□□ 1.09
VPS35-202ENST00000561713 CUL5Q93034 780 aa21.85■■□□□ 1.09
VPS35-202ENST00000561713 TUT1Q9H6E5 874 aaKnown RBP21.85■■□□□ 1.09
VPS35-202ENST00000561713 SLC12A7Q9Y666 1083 aa21.85■■□□□ 1.09
VPS35-202ENST00000561713 CNTNAP5Q8WYK1 1306 aa21.84■■□□□ 1.09
VPS35-202ENST00000561713 C5orf42Q9H799 3197 aa21.84■■□□□ 1.09
VPS35-202ENST00000561713 GRXCR2A6NFK2 248 aa21.84■■□□□ 1.09
VPS35-202ENST00000561713 UPP2O95045 317 aa21.84■■□□□ 1.09
VPS35-202ENST00000561713 CTSHP09668 335 aa21.84■■□□□ 1.09
VPS35-202ENST00000561713 SSTR3P32745 418 aaPredicted RBP21.84■■□□□ 1.09
VPS35-202ENST00000561713 TMTC3Q6ZXV5 915 aa21.84■■□□□ 1.09
VPS35-202ENST00000561713 TOP1MTQ969P6 601 aa21.84■■□□□ 1.09
VPS35-202ENST00000561713 YME1L1Q96TA2 773 aa21.84■■□□□ 1.09
VPS35-202ENST00000561713 MTA3Q9BTC8 594 aa21.84■■□□□ 1.09
VPS35-202ENST00000561713 RNPEPQ9H4A4 650 aa21.84■■□□□ 1.09
VPS35-202ENST00000561713 PKD2L1Q9P0L9 805 aa21.84■■□□□ 1.09
VPS35-202ENST00000561713 WDFY4Q6ZS81 3184 aa21.84■■□□□ 1.09
VPS35-202ENST00000561713 H3BQ06 376 aaPredicted RBP21.83■■□□□ 1.09
VPS35-202ENST00000561713 FIBPO43427 364 aa21.83■■□□□ 1.09
VPS35-202ENST00000561713 ICAM3P32942 547 aa21.83■■□□□ 1.09
VPS35-202ENST00000561713 LIFRP42702 1097 aa21.83■■□□□ 1.09
VPS35-202ENST00000561713 GNAQP50148 359 aa21.83■■□□□ 1.09
VPS35-202ENST00000561713 PTPROQ16827 1216 aa21.83■■□□□ 1.09
VPS35-202ENST00000561713 UTP14CQ5TAP6 766 aaKnown RBP21.83■■□□□ 1.09
VPS35-202ENST00000561713 PCNX4Q63HM2 1172 aa21.83■■□□□ 1.09
VPS35-202ENST00000561713 METTL7BQ6UX53 244 aa21.83■■□□□ 1.09
VPS35-202ENST00000561713 HEATR3Q7Z4Q2 680 aa21.83■■□□□ 1.09
VPS35-202ENST00000561713 NEK9Q8TD19 979 aa21.83■■□□□ 1.09
VPS35-202ENST00000561713 SEPT8Q92599 483 aa21.83■■□□□ 1.09
VPS35-202ENST00000561713 LZTS2Q9BRK4 669 aa21.83■■□□□ 1.09
VPS35-202ENST00000561713 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.82■■□□□ 1.08
VPS35-202ENST00000561713 SPATA31C2B4DYI2 1134 aa21.82■■□□□ 1.08
VPS35-202ENST00000561713 H3BNC9 293 aa21.82■■□□□ 1.08
VPS35-202ENST00000561713 PIK3CDO00329 1044 aa21.82■■□□□ 1.08
VPS35-202ENST00000561713 GPM6BQ13491 265 aa21.82■■□□□ 1.08
VPS35-202ENST00000561713 ADCK5Q3MIX3 580 aa21.82■■□□□ 1.08
VPS35-202ENST00000561713 RASEFQ8IZ41 740 aa21.82■■□□□ 1.08
VPS35-202ENST00000561713 SAMD11Q96NU1 681 aa21.82■■□□□ 1.08
VPS35-202ENST00000561713 GPR20Q99678 358 aa21.82■■□□□ 1.08
VPS35-202ENST00000561713 SETD4Q9NVD3 440 aa21.82■■□□□ 1.08
VPS35-202ENST00000561713 LOXHD1Q8IVV2 1947 aa21.82■■□□□ 1.08
VPS35-202ENST00000561713 NLRC5Q86WI3 1866 aa21.81■■□□□ 1.08
VPS35-202ENST00000561713 PRR33A8MZF0 331 aa21.81■■□□□ 1.08
VPS35-202ENST00000561713 CALM1P0DP23 149 aa21.81■■□□□ 1.08
VPS35-202ENST00000561713 CALM2P0DP24 149 aa21.81■■□□□ 1.08
VPS35-202ENST00000561713 CALM3P0DP25 149 aa21.81■■□□□ 1.08
VPS35-202ENST00000561713 TCEAL5Q5H9L2 206 aa21.81■■□□□ 1.08
VPS35-202ENST00000561713 APOA5Q6Q788 366 aa21.81■■□□□ 1.08
VPS35-202ENST00000561713 TMEM192Q8IY95 271 aa21.81■■□□□ 1.08
VPS35-202ENST00000561713 BANK1Q8NDB2 785 aa21.81■■□□□ 1.08
VPS35-202ENST00000561713 PSTPIP2Q9H939 334 aa21.81■■□□□ 1.08
VPS35-202ENST00000561713 TRIOO75962 3097 aa21.81■■□□□ 1.08
VPS35-202ENST00000561713 MUC6Q6W4X9 2439 aa21.8■■□□□ 1.08
VPS35-202ENST00000561713 STAM2O75886 525 aa21.8■■□□□ 1.08
VPS35-202ENST00000561713 SMARCA1P28370 1054 aa21.8■■□□□ 1.08
VPS35-202ENST00000561713 NEDD9Q14511 834 aa21.8■■□□□ 1.08
VPS35-202ENST00000561713 TIGD5Q53EQ6 642 aa21.8■■□□□ 1.08
VPS35-202ENST00000561713 WWC2Q6AWC2 1192 aa21.8■■□□□ 1.08
VPS35-202ENST00000561713 SGMS1Q86VZ5 419 aa21.8■■□□□ 1.08
VPS35-202ENST00000561713 TMTC2Q8N394 836 aa21.8■■□□□ 1.08
VPS35-202ENST00000561713 FANCBQ8NB91 859 aa21.8■■□□□ 1.08
VPS35-202ENST00000561713 PGBD1Q96JS3 809 aa21.8■■□□□ 1.08
VPS35-202ENST00000561713 USP26Q9BXU7 913 aa21.8■■□□□ 1.08
VPS35-202ENST00000561713 BRPF3Q9ULD4 1205 aa21.8■■□□□ 1.08
VPS35-202ENST00000561713 CAND2O75155 1236 aa21.79■■□□□ 1.08
VPS35-202ENST00000561713 CDC45O75419 566 aa21.79■■□□□ 1.08
VPS35-202ENST00000561713 PUS10Q3MIT2 529 aaKnown RBP21.79■■□□□ 1.08
VPS35-202ENST00000561713 RNF20Q5VTR2 975 aa21.79■■□□□ 1.08
VPS35-202ENST00000561713 TYW1BQ6NUM6 668 aa21.79■■□□□ 1.08
VPS35-202ENST00000561713 EP400NLQ6ZTU2 488 aa21.79■■□□□ 1.08
VPS35-202ENST00000561713 NEK1Q96PY6 1258 aa21.79■■□□□ 1.08
VPS35-202ENST00000561713 IFIH1Q9BYX4 1025 aaKnown RBP21.79■■□□□ 1.08
VPS35-202ENST00000561713 ATP9AO75110 1047 aa21.78■■□□□ 1.08
VPS35-202ENST00000561713 ALADP13716 330 aa21.78■■□□□ 1.08
VPS35-202ENST00000561713 CPA1P15085 419 aa21.78■■□□□ 1.08
VPS35-202ENST00000561713 ITGB5P18084 799 aa21.78■■□□□ 1.08
VPS35-202ENST00000561713 PABPC5Q96DU9 382 aaKnown RBP21.78■■□□□ 1.08
VPS35-202ENST00000561713 UIMC1Q96RL1 719 aa21.78■■□□□ 1.08
VPS35-202ENST00000561713 COL4A6Q14031 1691 aa21.77■■□□□ 1.08
VPS35-202ENST00000561713 SPDYE3A6NKU9 549 aa21.77■■□□□ 1.08
VPS35-202ENST00000561713 GNAT1P11488 350 aa21.77■■□□□ 1.08
VPS35-202ENST00000561713 KCNA2P16389 499 aa21.77■■□□□ 1.08
VPS35-202ENST00000561713 COL19A1Q14993 1142 aa21.77■■□□□ 1.08
VPS35-202ENST00000561713 RTN1Q16799 776 aa21.77■■□□□ 1.08
VPS35-202ENST00000561713 NLRX1Q86UT6 975 aa21.77■■□□□ 1.08
VPS35-202ENST00000561713 LMBR1Q8WVP7 490 aa21.77■■□□□ 1.08
VPS35-202ENST00000561713 NSUN3Q9H649 340 aaKnown RBP21.77■■□□□ 1.08
VPS35-202ENST00000561713 NAP1L2Q9ULW6 460 aaPredicted RBP21.77■■□□□ 1.08
VPS35-202ENST00000561713 ATG2AQ2TAZ0 1938 aa21.76■■□□□ 1.07
VPS35-202ENST00000561713 KLF18A0A0U1RQI7 1052 aa21.76■■□□□ 1.07
VPS35-202ENST00000561713 GOLGA8AA7E2F4 631 aa21.76■■□□□ 1.07
VPS35-202ENST00000561713 GOLGA8BA8MQT2 603 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms