RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 LPXNO60711 386 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 NCLP19338 710 aaKnown RBP13.41□□□□□ -0.26
LDLR-212ENST00000560467 PTPN11Q06124 597 aaPredicted RBP13.41□□□□□ -0.26
LDLR-212ENST00000560467 GPNMBQ14956 572 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 CDC37Q16543 378 aaPredicted RBP13.41□□□□□ -0.26
LDLR-212ENST00000560467 ATL3Q6DD88 541 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 MCTP2Q6DN12 878 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 GDF6Q6KF10 455 aaPredicted RBP13.41□□□□□ -0.26
LDLR-212ENST00000560467 PPP1R18Q6NYC8 613 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 CCDC62Q6P9F0 684 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 FBXO11Q86XK2 927 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 DNERQ8NFT8 737 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 GDPD5Q8WTR4 605 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 DHX38Q92620 1227 aaKnown RBP13.41□□□□□ -0.26
LDLR-212ENST00000560467 TNPO1Q92973 898 aaKnown RBP13.41□□□□□ -0.26
LDLR-212ENST00000560467 MPHOSPH6Q99547 160 aaKnown RBP13.41□□□□□ -0.26
LDLR-212ENST00000560467 C1QTNF1Q9BXJ1 281 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 FOXP1Q9H334 677 aaPredicted RBP13.41□□□□□ -0.26
LDLR-212ENST00000560467 EPHX3Q9H6B9 360 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 JMJD4Q9H9V9 463 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 PCDHA1Q9Y5I3 950 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 TRANK1O15050 2925 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 KIF28PB7ZC32 967 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 TLL1O43897 1013 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 BAIAP3O94812 1187 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 MMP1P03956 469 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 MMP3P08254 477 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 KCNJ6P48051 423 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 WDR5P61964 334 aaKnown RBP13.4□□□□□ -0.26
LDLR-212ENST00000560467 DEFB103AP81534 67 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 ARHGAP1Q07960 439 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 LY6KQ17RY6 165 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 TCTN1Q2MV58 587 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 SEPT14Q6ZU15 432 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 FERMT3Q86UX7 667 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 TEX2Q8IWB9 1127 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 TBC1D5Q92609 795 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 KAT2BQ92831 832 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 CUL5Q93034 780 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 FAM122AQ96E09 287 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 VPS54Q9P1Q0 977 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 COL20A1Q9P218 1284 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 NOL7Q9UMY1 257 aaKnown RBP13.4□□□□□ -0.26
LDLR-212ENST00000560467 COG5Q9UP83 839 aa13.4□□□□□ -0.26
LDLR-212ENST00000560467 SCN5AQ14524 2016 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 SMCO2A6NFE2 343 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 CYTH3O43739 400 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 DTNBO60941 627 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 SELPP16109 830 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 ADCY7P51828 1080 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 KRT85P78386 507 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 PKN1Q16512 942 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 LRRC8DQ7L1W4 858 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 DIS3L2Q8IYB7 885 aaKnown RBP13.39□□□□□ -0.27
LDLR-212ENST00000560467 CAGE1Q8TC20 777 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 SYTL5Q8TDW5 730 aaPredicted RBP13.39□□□□□ -0.27
LDLR-212ENST00000560467 AFAP1L1Q8TED9 768 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 HLA-CQ95604 372 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 TAAR1Q96RJ0 339 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 PHF20Q9BVI0 1012 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 MTUS1Q9ULD2 1270 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 KCNJ14Q9UNX9 436 aa13.39□□□□□ -0.27
LDLR-212ENST00000560467 MRPL11Q9Y3B7 192 aaKnown RBP13.39□□□□□ -0.27
LDLR-212ENST00000560467 TCF20Q9UGU0 1960 aaKnown RBP13.38□□□□□ -0.27
LDLR-212ENST00000560467 CCDC194A0A1B0GVG4 234 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 GOLGA6L4A6NEF3 574 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 DDX11L8A8MPP1 907 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 B4DLN1 442 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 NBNO60934 754 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 GH1P01241 217 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 PKP1Q13835 747 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 QRICH1Q2TAL8 776 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 WWC2Q6AWC2 1192 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 SESTD1Q86VW0 696 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 MCF2L2Q86YR7 1114 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 NOSTRINQ8IVI9 506 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 BLIDQ8IZY5 108 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 CCDC155Q8N6L0 562 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 GPKOWQ92917 476 aaPredicted RBP eCLIP13.38□□□□□ -0.27
LDLR-212ENST00000560467 KHSRPQ92945 711 aaKnown RBP eCLIP13.38□□□□□ -0.27
LDLR-212ENST00000560467 AIFM3Q96NN9 605 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 LRFN3Q9BTN0 628 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 SCAND2PQ9GZW5 306 aaPredicted RBP13.38□□□□□ -0.27
LDLR-212ENST00000560467 PSTPIP2Q9H939 334 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 PCDHA4Q9UN74 947 aa13.38□□□□□ -0.27
LDLR-212ENST00000560467 ESYT2A0FGR8 921 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 STXBP3O00186 592 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 ZNF286BP0CG31 522 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 RILPL1Q5EBL4 403 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 NSUN6Q8TEA1 469 aaKnown RBP13.37□□□□□ -0.27
LDLR-212ENST00000560467 WNT8BQ93098 351 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 MTMR8Q96EF0 704 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 ZBED2Q9BTP6 218 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 EHMT1Q9H9B1 1298 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 HDAC6Q9UBN7 1215 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 CEP131Q9UPN4 1083 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 ZDHHC9Q9Y397 364 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 BRWD1Q9NSI6 2320 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 TET1Q8NFU7 2136 aa13.37□□□□□ -0.27
LDLR-212ENST00000560467 ABCB11O95342 1321 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms