RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 RWDD1Q9H446 243 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-223ENST00000556689 NRCAMQ92823 1304 aa14.63□□□□□ -0.07
SHMT2-223ENST00000556689 ENPP3O14638 875 aa14.62□□□□□ -0.07
SHMT2-223ENST00000556689 GRM6O15303 877 aa14.62□□□□□ -0.07
SHMT2-223ENST00000556689 CYTH3O43739 400 aa14.62□□□□□ -0.07
SHMT2-223ENST00000556689 IRS1P35568 1242 aa14.62□□□□□ -0.07
SHMT2-223ENST00000556689 HYAL1Q12794 435 aa14.62□□□□□ -0.07
SHMT2-223ENST00000556689 SEMA3FQ13275 785 aa14.62□□□□□ -0.07
SHMT2-223ENST00000556689 SMAD2Q15796 467 aaKnown RBP14.62□□□□□ -0.07
SHMT2-223ENST00000556689 TRIM50Q86XT4 487 aa14.62□□□□□ -0.07
SHMT2-223ENST00000556689 LMBR1Q8WVP7 490 aa14.62□□□□□ -0.07
SHMT2-223ENST00000556689 CLP1Q92989 425 aaKnown RBP14.62□□□□□ -0.07
SHMT2-223ENST00000556689 MFSD14AQ96MC6 490 aa14.62□□□□□ -0.07
SHMT2-223ENST00000556689 POP1Q99575 1024 aaKnown RBP14.62□□□□□ -0.07
SHMT2-223ENST00000556689 EHMT1Q9H9B1 1298 aa14.62□□□□□ -0.07
SHMT2-223ENST00000556689 MICAL3Q7RTP6 2002 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 ERICH2A1L162 156 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 IFIT3O14879 490 aaKnown RBP14.61□□□□□ -0.07
SHMT2-223ENST00000556689 MBTPS2O43462 519 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 GHRP10912 638 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 SP4Q02446 784 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 DLX2Q07687 328 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-223ENST00000556689 AAMPQ13685 434 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 CLUL1Q15846 466 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 TAF2Q6P1X5 1199 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 XRRA1Q6P2D8 792 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 HFE2Q6ZVN8 426 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 RSPH3Q86UC2 560 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 GIMAP8Q8ND71 665 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-223ENST00000556689 IGFLR1Q9H665 355 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 TELO2Q9Y4R8 837 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 SUPT16HQ9Y5B9 1047 aaKnown RBP14.61□□□□□ -0.07
SHMT2-223ENST00000556689 FRMPD4Q14CM0 1322 aa14.61□□□□□ -0.07
SHMT2-223ENST00000556689 MUC6Q6W4X9 2439 aa14.6□□□□□ -0.07
SHMT2-223ENST00000556689 LINC00271P0C7V0 271 aa14.6□□□□□ -0.07
SHMT2-223ENST00000556689 NUCB1Q02818 461 aa14.6□□□□□ -0.07
SHMT2-223ENST00000556689 BTG3Q14201 252 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-223ENST00000556689 LPIN1Q14693 890 aa14.6□□□□□ -0.07
SHMT2-223ENST00000556689 PCNX4Q63HM2 1172 aa14.6□□□□□ -0.07
SHMT2-223ENST00000556689 NLRX1Q86UT6 975 aa14.6□□□□□ -0.07
SHMT2-223ENST00000556689 CUL5Q93034 780 aa14.6□□□□□ -0.07
SHMT2-223ENST00000556689 ZNF689Q96CS4 500 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-223ENST00000556689 PLVAPQ9BX97 442 aa14.6□□□□□ -0.07
SHMT2-223ENST00000556689 MUTYHQ9UIF7 546 aa14.6□□□□□ -0.07
SHMT2-223ENST00000556689 ADGRA3Q8IWK6 1321 aa14.6□□□□□ -0.07
SHMT2-223ENST00000556689 WDFY4Q6ZS81 3184 aa14.6□□□□□ -0.07
SHMT2-223ENST00000556689 STXBP3O00186 592 aa14.59□□□□□ -0.07
SHMT2-223ENST00000556689 TCF7P36402 384 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-223ENST00000556689 MGAT3Q09327 533 aa14.59□□□□□ -0.07
SHMT2-223ENST00000556689 TROAPQ12815 778 aa14.59□□□□□ -0.07
SHMT2-223ENST00000556689 ADAM15Q13444 863 aa14.59□□□□□ -0.07
SHMT2-223ENST00000556689 SMAD4Q13485 552 aaKnown RBP14.59□□□□□ -0.07
SHMT2-223ENST00000556689 HERC4Q5GLZ8 1057 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-223ENST00000556689 RUFY4Q6ZNE9 571 aa14.59□□□□□ -0.07
SHMT2-223ENST00000556689 RNF135Q8IUD6 432 aa14.59□□□□□ -0.07
SHMT2-223ENST00000556689 SMARCC2Q8TAQ2 1214 aa14.59□□□□□ -0.07
SHMT2-223ENST00000556689 PIBF1Q8WXW3 757 aa14.59□□□□□ -0.07
SHMT2-223ENST00000556689 SEPT1Q8WYJ6 367 aa14.59□□□□□ -0.07
SHMT2-223ENST00000556689 CD207Q9UJ71 328 aa14.59□□□□□ -0.07
SHMT2-223ENST00000556689 PLAGL2Q9UPG8 496 aa14.59□□□□□ -0.07
SHMT2-223ENST00000556689 U3KPZ7 1027 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-223ENST00000556689 COL4A6Q14031 1691 aa14.58□□□□□ -0.07
SHMT2-223ENST00000556689 DGKIO75912 1065 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 MMP1P03956 469 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 GTF2F1P35269 517 aaKnown RBP eCLIP14.58□□□□□ -0.08
SHMT2-223ENST00000556689 PPFIA1Q13136 1202 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 WTAPQ15007 396 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 SART3Q15020 963 aaKnown RBP14.58□□□□□ -0.08
SHMT2-223ENST00000556689 NAALADL2Q58DX5 795 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 USP17L6PQ6QN14 398 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 CATIPQ7Z7H3 387 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 DNAJB3Q8WWF6 145 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 EDAQ92838 391 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 P2RX5Q93086 422 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 PPP2R3CQ969Q6 453 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 RC3H2Q9HBD1 1191 aaKnown RBP14.58□□□□□ -0.08
SHMT2-223ENST00000556689 SENP2Q9HC62 589 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 ALG13Q9NP73 1137 aaKnown RBP14.58□□□□□ -0.08
SHMT2-223ENST00000556689 ERAP1Q9NZ08 941 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 MYH6P13533 1939 aa14.58□□□□□ -0.08
SHMT2-223ENST00000556689 LINC01565O15544 149 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 ATP9AO75110 1047 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 TBX10O75333 385 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 CSPG5O95196 566 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 IGHDP01880 384 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 NDUFV1P49821 464 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 GRIK4Q16099 956 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 FBXO47Q5MNV8 452 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 TSHZ1Q6ZSZ6 1077 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 GLG1Q92896 1179 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 CDHR1Q96JP9 859 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 IL25Q9H293 177 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 SMARCAD1Q9H4L7 1026 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 TUBE1Q9UJT0 475 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 CDY2AQ9Y6F7 541 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 C5orf42Q9H799 3197 aa14.57□□□□□ -0.08
SHMT2-223ENST00000556689 PIEZO1Q92508 2521 aa14.56□□□□□ -0.08
SHMT2-223ENST00000556689 GSTTP1A0A1W2PQM5 241 aa14.56□□□□□ -0.08
SHMT2-223ENST00000556689 MBLAC1A4D2B0 266 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-223ENST00000556689 PIK3CDO00329 1044 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms