RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 EPS15P42566 896 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 EIF1AXP47813 144 aaKnown RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 GNAQP50148 359 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 ANTXR2P58335 489 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 NUCB2P80303 420 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 HMGN5P82970 282 aaKnown RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 AKAP17AQ02040 695 aaKnown RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 APOBRQ0VD83 1088 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 NFIAQ12857 509 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 RASA3Q14644 834 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 DUOXA2Q1HG44 320 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 FAM47AQ5JRC9 791 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 TATDN1Q6P1N9 297 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 NOL8Q76FK4 1167 aaKnown RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 CYB5R4Q7L1T6 521 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 CHST3Q7LGC8 479 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 WASF1Q92558 559 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 UTP4Q969X6 686 aaKnown RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 DYNLL2Q96FJ2 89 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 KLHDC7BQ96G42 594 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 FAM46AQ96IP4 442 aaKnown RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 CSRNP1Q96S65 589 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 MAP3K14Q99558 947 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 CEP41Q9BYV8 373 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 C7orf69Q9H7B7 122 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 KANSL2Q9H9L4 492 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 INCENPQ9NQS7 918 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 RBM28Q9NW13 759 aaKnown RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 CHMP5Q9NZZ3 219 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 ZNF646O15015 1829 aaPredicted RBP5.82□□□□□ -1.48
VTI1B-202ENST00000553619 COL4A5P29400 1685 aa5.82□□□□□ -1.48
VTI1B-202ENST00000553619 TNKSO95271 1327 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 LAMB1P07942 1786 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 POLR2AP24928 1970 aaKnown RBP5.81□□□□□ -1.48
VTI1B-202ENST00000553619 KIAA1324LA8MWY0 1029 aaPredicted RBP5.81□□□□□ -1.48
VTI1B-202ENST00000553619 MPHOSPH10O00566 681 aaKnown RBP5.81□□□□□ -1.48
VTI1B-202ENST00000553619 DDAH1O94760 285 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 TTLL1O95922 423 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 PDGFAP04085 211 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 VEGFAP15692 232 aaPredicted RBP5.81□□□□□ -1.48
VTI1B-202ENST00000553619 XBP1P17861 261 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 ARL4DP49703 201 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 METAP2P50579 478 aaKnown RBP eCLIP5.81□□□□□ -1.48
VTI1B-202ENST00000553619 CACNB3P54284 484 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 SSRP1Q08945 709 aaKnown RBP5.81□□□□□ -1.48
VTI1B-202ENST00000553619 STK3Q13188 491 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 SEC23AQ15436 765 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 ME3Q16798 604 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 ABCB5Q2M3G0 1257 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 SLC4A8Q2Y0W8 1093 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 UVSSAQ2YD98 709 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 ANGEL2Q5VTE6 544 aaKnown RBP5.81□□□□□ -1.48
VTI1B-202ENST00000553619 APOA5Q6Q788 366 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 TMEM179Q6ZVK1 233 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 ZDHHC13Q8IUH4 622 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 CCDC83Q8IWF9 413 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 TRIM42Q8IWZ5 723 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 ZFPM1Q8IX07 1006 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 FAM184AQ8NB25 1140 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 FANCBQ8NB91 859 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 KLHL23Q8NBE8 558 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 RGS22Q8NE09 1264 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 CTCFLQ8NI51 663 aaPredicted RBP5.81□□□□□ -1.48
VTI1B-202ENST00000553619 TCEANC2Q96MN5 208 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 HHIPQ96QV1 700 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 LZTS2Q9BRK4 669 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 ZKSCAN3Q9BRR0 538 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 ZNF341Q9BYN7 854 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 LRRC2Q9BYS8 371 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 ADAM19Q9H013 955 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 DEFB129Q9H1M3 183 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 LY9Q9HBG7 655 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 NYAP2Q9P242 653 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 TPCN1Q9ULQ1 816 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 SYNPO2Q9UMS6 1093 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 PCDHAC2Q9Y5I4 1007 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 TAF6LQ9Y6J9 622 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 SCN4AP35499 1836 aa5.81□□□□□ -1.48
VTI1B-202ENST00000553619 TIAM2Q8IVF5 1701 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 HMX2A2RU54 273 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 A6NHS1 94 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 GOLGA8AA7E2F4 631 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 GOLGA8BA8MQT2 603 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 H3BRJ5 948 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 CTNND1O60716 968 aaKnown RBP5.8□□□□□ -1.48
VTI1B-202ENST00000553619 PHACTR2O75167 634 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 TRPA1O75762 1119 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 ASNSP08243 561 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 SMARCA1P28370 1054 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 SHMT1P34896 483 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 CAP2P40123 477 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 CCT2P78371 535 aaKnown RBP5.8□□□□□ -1.48
VTI1B-202ENST00000553619 LARP1BQ659C4 914 aaKnown RBP5.8□□□□□ -1.48
VTI1B-202ENST00000553619 RCSD1Q6JBY9 416 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 CDC37L1Q7L3B6 337 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 USP48Q86UV5 1035 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 KRTAP19-1Q8IUB9 90 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 ZNF654Q8IZM8 581 aa5.8□□□□□ -1.48
VTI1B-202ENST00000553619 ENAHQ8N8S7 591 aaPredicted RBP5.8□□□□□ -1.48
VTI1B-202ENST00000553619 C1orf127Q8N9H9 656 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms