RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 BRAPQ7Z569 592 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 FGD2Q7Z6J4 655 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 PPIL6Q8IXY8 311 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 UBR7Q8N806 425 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 ZCRB1Q8TBF4 217 aaKnown RBP5.83□□□□□ -1.48
VPS29-205ENST00000548539 C1orf159Q96HA4 380 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 CCDC140Q96MF4 163 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 C11orf84Q9BUA3 381 aaPredicted RBP5.83□□□□□ -1.48
VPS29-205ENST00000548539 CLEC1BQ9P126 229 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 RWDD3Q9Y3V2 267 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 ASXL2Q76L83 1435 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 LAMTOR5O43504 91 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 RFPL3O75679 317 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 DNAJC8O75937 253 aaPredicted RBP5.82□□□□□ -1.48
VPS29-205ENST00000548539 CPP00450 1065 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 SCG5P05408 212 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 SEPHS1P49903 392 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 ANAPC15P60006 121 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 GABREP78334 506 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 AMPD3Q01432 767 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 KYQ8NBH2 561 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 TXNDC5Q8NBS9 432 aaKnown RBP5.82□□□□□ -1.48
VPS29-205ENST00000548539 KREMEN2Q8NCW0 462 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 FRS2Q8WU20 508 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 COPS5Q92905 334 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 LCORQ96JN0 433 aaPredicted RBP5.82□□□□□ -1.48
VPS29-205ENST00000548539 FAM126AQ9BYI3 521 aaPredicted RBP5.82□□□□□ -1.48
VPS29-205ENST00000548539 DEF6Q9H4E7 631 aa5.82□□□□□ -1.48
VPS29-205ENST00000548539 TMEFF2Q9UIK5 374 aaPredicted RBP5.82□□□□□ -1.48
VPS29-205ENST00000548539 NOP58Q9Y2X3 529 aaKnown RBP5.82□□□□□ -1.48
VPS29-205ENST00000548539 A0A087X0B3 334 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 NPEPPSL1A6NEC2 478 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 PDE8AO60658 829 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 RASGRP1O95267 797 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 C8BP07358 591 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 PLS3P13797 630 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 KLF10Q13118 480 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 TRIM61Q5EBN2 209 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 THNSL2Q86YJ6 484 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 PALM2Q8IXS6 379 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 NPLOC4Q8TAT6 608 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 USP33Q8TEY7 942 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 PTPRN2Q92932 1015 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 TARS2Q9BW92 718 aaKnown RBP5.81□□□□□ -1.48
VPS29-205ENST00000548539 TRIM39Q9HCM9 518 aa5.81□□□□□ -1.48
VPS29-205ENST00000548539 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.8□□□□□ -1.48
VPS29-205ENST00000548539 ARNTLO00327 626 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 MEFVO15553 781 aaPredicted RBP5.8□□□□□ -1.48
VPS29-205ENST00000548539 OPA1O60313 960 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 LCP1P13796 627 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 ZNF460Q14592 562 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 ZNF585AQ6P3V2 769 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 PLEKHH3Q7Z736 793 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 LRRTM3Q86VH5 581 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 CCDC103Q8IW40 242 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 TTLL6Q8N841 843 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 CHAC2Q8WUX2 184 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 SCLYQ96I15 445 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 PHF20Q9BVI0 1012 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 PPP4R1LQ9P1A2 415 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 FBLN5Q9UBX5 448 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 PCDHA9Q9Y5H5 950 aa5.8□□□□□ -1.48
VPS29-205ENST00000548539 TNPO3Q9Y5L0 923 aaKnown RBP5.8□□□□□ -1.48
VPS29-205ENST00000548539 DDX3XO00571 662 aaKnown RBP eCLIP5.79□□□□□ -1.482e-8■■□□□ 13
VPS29-205ENST00000548539 EFCAB14O75071 495 aa5.79□□□□□ -1.48
VPS29-205ENST00000548539 CRTAMO95727 393 aa5.79□□□□□ -1.48
VPS29-205ENST00000548539 VIL1P09327 827 aaKnown RBP5.79□□□□□ -1.48
VPS29-205ENST00000548539 STAT3P40763 770 aa5.79□□□□□ -1.48
VPS29-205ENST00000548539 CT47A1Q5JQC4 288 aaPredicted RBP5.79□□□□□ -1.48
VPS29-205ENST00000548539 EEF1DP3Q658K8 133 aa5.79□□□□□ -1.48
VPS29-205ENST00000548539 STYK1Q6J9G0 422 aa5.79□□□□□ -1.48
VPS29-205ENST00000548539 RCSD1Q6JBY9 416 aa5.79□□□□□ -1.48
VPS29-205ENST00000548539 CIR1Q86X95 450 aaPredicted RBP5.79□□□□□ -1.48
VPS29-205ENST00000548539 CPNE8Q86YQ8 564 aa5.79□□□□□ -1.48
VPS29-205ENST00000548539 GSTCDQ8NEC7 633 aa5.79□□□□□ -1.48
VPS29-205ENST00000548539 DCAF4Q8WV16 495 aa5.79□□□□□ -1.48
VPS29-205ENST00000548539 CD248Q9HCU0 757 aa5.79□□□□□ -1.48
VPS29-205ENST00000548539 MAGEC2Q9UBF1 373 aaPredicted RBP5.79□□□□□ -1.48
VPS29-205ENST00000548539 ING1Q9UK53 422 aaPredicted RBP5.79□□□□□ -1.48
VPS29-205ENST00000548539 GSG1L2A8MUP6 293 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 B4GALT3O60512 393 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 MSCO60682 206 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 NEK4P51957 841 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 WWC2Q6AWC2 1192 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 CD300LDQ6UXZ3 194 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 ETV3LQ6ZN32 361 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 MAMDC2Q7Z304 686 aaPredicted RBP5.78□□□□□ -1.48
VPS29-205ENST00000548539 KRT26Q7Z3Y9 468 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 MTDHQ86UE4 582 aaKnown RBP5.78□□□□□ -1.48
VPS29-205ENST00000548539 DIO2Q92813 273 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 MAGEB10Q96LZ2 347 aaPredicted RBP5.78□□□□□ -1.48
VPS29-205ENST00000548539 SYT3Q9BQG1 590 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 MTA3Q9BTC8 594 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 BRINP2Q9C0B6 783 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 CAAP1Q9H8G2 361 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 PCDHA8Q9Y5H6 950 aa5.78□□□□□ -1.48
VPS29-205ENST00000548539 NPHP3-ACAD11A0A0J9YXS1 232 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 AQP7O14520 342 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 KCNQ2O43526 872 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 KPNA6O60684 536 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms