RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	GJB1	P08034	283 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	SFN	P31947	248 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	TCF7	P36402	384 aa	Predicted RBP	11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	JAK3	P52333	1124 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	IRX5	P78411	483 aa	Predicted RBP	11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	PPP2R5C	Q13362	524 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	ZRSR1	Q15695	479 aa	Known RBP	11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	DGKD	Q16760	1214 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	LHX8	Q68G74	356 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	SWSAP1	Q6NVH7	229 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	SMAP1	Q8IYB5	467 aa	Predicted RBP	11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	KRI1	Q8N9T8	703 aa	Known RBP	11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	ERMN	Q8TAM6	284 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	U2AF1L4	Q8WU68	220 aa	Known RBP	11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	LEO1	Q8WVC0	666 aa	Predicted RBP	11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	GLG1	Q92896	1179 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	EMID1	Q96A84	441 aa	Predicted RBP	11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	GPR20	Q99678	358 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	GDPD2	Q9HCC8	539 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	LRWD1	Q9UFC0	647 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	RCOR1	Q9UKL0	485 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	VAV3	Q9UKW4	847 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	TELO2	Q9Y4R8	837 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	PCDHA10	Q9Y5I2	948 aa		11.43	□□□□□ -0.58
CPSF7-221	ENST00000543545	GSTTP1	A0A1W2PQM5	241 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	MYADML2	A6NDP7	307 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	GOLGA6L4	A6NEF3	574 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	POTEM	A6NI47	508 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	KBTBD13	C9JR72	458 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	EML1	O00423	815 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	KPNA6	O60684	536 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	PPP6R2	O75170	966 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	PPFIA4	O75335	1185 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	SGPL1	O95470	568 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	MMP3	P08254	477 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	FXR2	P51116	673 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	PDIA5	Q14554	519 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	LRRC41	Q15345	812 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	EPHA7	Q15375	998 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	IL17A	Q16552	155 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	CSPP1	Q1MSJ5	1256 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	FAM160B1	Q5W0V3	765 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	KRT79	Q5XKE5	535 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	TRMT1L	Q7Z2T5	733 aa	Known RBP	11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	CKAP2L	Q8IYA6	745 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	PCSK9	Q8NBP7	692 aa	Known RBP	11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	RASSF8	Q8NHQ8	419 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	CLIC6	Q96NY7	704 aa		11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	UPF3A	Q9H1J1	476 aa	Known RBP	11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	SRPRB	Q9Y5M8	271 aa	Known RBP	11.42	□□□□□ -0.58
CPSF7-221	ENST00000543545	MGAM	O43451	1857 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545		A6NJR5	290 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	CUTA	O60888	179 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	ADAMTS4	O75173	837 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	SUPT20HL2	P0C7V6	817 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	LONP1	P36776	959 aa	Known RBP	11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	CCT6A	P40227	531 aa	Known RBP	11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	UBA7	P41226	1012 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	STAT5B	P51692	787 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	KCNA10	Q16322	511 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	SPECC1	Q5M775	1068 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	PDXDC2P	Q6P474	469 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	ABHD15	Q6UXT9	468 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	TPH2	Q8IWU9	490 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	TNS4	Q8IZW8	715 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	RDM1	Q8NG50	284 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	GBP4	Q96PP9	640 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	EIF2AK1	Q9BQI3	630 aa	Known RBP	11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	CSRNP2	Q9H175	543 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	SMARCAD1	Q9H4L7	1026 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	ZNF302	Q9NR11	478 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	GABBR1	Q9UBS5	961 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	FBXO2	Q9UK22	296 aa	Predicted RBP	11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	OGDHL	Q9ULD0	1010 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	STK24	Q9Y6E0	443 aa		11.41	□□□□□ -0.58
CPSF7-221	ENST00000543545	POTEF	A5A3E0	1075 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	PP2D1	A8MPX8	630 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	ATG7	O95352	703 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	LGALS2	P05162	132 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	P4HB	P07237	508 aa	Known RBP	11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	ZNF286B	P0CG31	522 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	MARK3	P27448	753 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	CDC25A	P30304	524 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	TXLNA	P40222	546 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	GJA8	P48165	433 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	CYP4A11	Q02928	519 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	GRIN1	Q05586	938 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	SPIRE1	Q08AE8	756 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	CTTN	Q14247	550 aa	Known RBP	11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	HAUS3	Q68CZ6	603 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	B3GNT9	Q6UX72	402 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	CXCL17	Q6UXB2	119 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	TRIM50	Q86XT4	487 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	BANK1	Q8NDB2	785 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	KLHDC9	Q8NEP7	349 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	SNX29	Q8TEQ0	813 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	ATP6V0A1	Q93050	837 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	ABHD8	Q96I13	439 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	DYDC2	Q96IM9	177 aa		11.4	□□□□□ -0.58
CPSF7-221	ENST00000543545	CDK5RAP3	Q96JB5	506 aa		11.4	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms