RNA–Protein interactions for RNA: ENST00000542841.1

SRGAP1-205, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 2

Gene SRGAP1, Length 836 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-205ENST00000542841 MUC6Q6W4X9 2439 aa13.21□□□□□ -0.3
SRGAP1-205ENST00000542841 PIEZO1Q92508 2521 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 ABHD14A-ACY1A0A1B0GW23 586 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 hCG_1984214I3L0E3 225 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 EFCAB14O75071 495 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 PLEKHA8P1O95397 391 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 PDHBP11177 359 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 SLC16A2P36021 539 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 MRE11P49959 708 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 RESTQ13127 1097 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 PUS10Q3MIT2 529 aaKnown RBP13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 PTCRAQ6ISU1 281 aaPredicted RBP13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 LRRC8DQ7L1W4 858 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 RASGRP2Q7LDG7 609 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 BRAPQ7Z569 592 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 SESTD1Q86VW0 696 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 SRBD1Q8N5C6 995 aaKnown RBP13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 ZNF713Q8N859 430 aaPredicted RBP13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 DNERQ8NFT8 737 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 SH3GLB2Q9NR46 395 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 PNMA2Q9UL42 364 aa13.2□□□□□ -0.3
SRGAP1-205ENST00000542841 LINC01553A4QN01 128 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 KLRF2D3W0D1 207 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 CXCL10P02778 98 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 IL9P15248 144 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 EDNRBP24530 442 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 KRT85P78386 507 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 IKBKEQ14164 716 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 GPNMBQ14956 572 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 SAFBQ15424 915 aaKnown RBP eCLIP13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 SYDE2Q5VT97 1194 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 TTBK2Q6IQ55 1244 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 GDF6Q6KF10 455 aaPredicted RBP13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 BTNL9Q6UXG8 535 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 TMEM87AQ8NBN3 555 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 CLEC4DQ8WXI8 215 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 TET1Q8NFU7 2136 aa13.19□□□□□ -0.3
SRGAP1-205ENST00000542841 GRXCR2A6NFK2 248 aa13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 NBNO60934 754 aa13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 CKBP12277 381 aa13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 RPS6P62753 249 aaKnown RBP13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 RBL2Q08999 1139 aa13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 PKN1Q16512 942 aa13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 PFKFB3Q16875 520 aaPredicted RBP13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 SKOR2Q2VWA4 1001 aaPredicted RBP13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 FBXO22Q8NEZ5 403 aa13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 AFG1LQ8WV93 481 aa13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 CTAGE1Q96RT6 745 aa13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 SCAND2PQ9GZW5 306 aaPredicted RBP13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 KCNH6Q9H252 994 aa13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 RIOX1Q9H6W3 641 aa13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 CFAP45Q9UL16 551 aa13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 INSL6Q9Y581 213 aa13.18□□□□□ -0.3
SRGAP1-205ENST00000542841 PTPRSQ13332 1948 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 FRMPD2Q68DX3 1309 aaPredicted RBP13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 ARIH2O95376 493 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 MMP1P03956 469 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 MMP3P08254 477 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 SCG2P13521 617 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 ZNF543Q08ER8 600 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 PTPROQ16827 1216 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 MCTP1Q6DN14 999 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 GALNT17Q6IS24 598 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 FAM117BQ6P1L5 589 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 STAG2Q8N3U4 1231 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 C7orf31Q8N865 590 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 CCDC148Q8NFR7 591 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 CCDC12Q8WUD4 166 aaPredicted RBP13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 DHX38Q92620 1227 aaKnown RBP13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 ZNF396Q96N95 335 aaPredicted RBP13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 FOXP1Q9H334 677 aaPredicted RBP13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 BRMS1Q9HCU9 246 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 GPCPD1Q9NPB8 672 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 GTF2IRD1Q9UHL9 959 aa13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 V9GY48 417 aaPredicted RBP13.17□□□□□ -0.3
SRGAP1-205ENST00000542841 TRIP12Q14669 1992 aaPredicted RBP13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 BRWD1Q9NSI6 2320 aa13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 DCXO43602 365 aa13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 GH1P01241 217 aa13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 U2AF2P26368 475 aaKnown RBP eCLIP13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 NHLH1Q02575 133 aa13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 LY6KQ17RY6 165 aa13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 FOXD4L5Q5VV16 416 aaPredicted RBP13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 CCDC82Q8N4S0 544 aa13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 NEK9Q8TD19 979 aa13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 FOXD4L4Q8WXT5 416 aaPredicted RBP13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 MRPL38Q96DV4 380 aaKnown RBP13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 RRP36Q96EU6 259 aaKnown RBP13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 C17orf80Q9BSJ5 609 aa13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 SEC63Q9UGP8 760 aaKnown RBP13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 FAM50BQ9Y247 325 aa13.16□□□□□ -0.3
SRGAP1-205ENST00000542841 BAZ2BQ9UIF8 2168 aaKnown RBP13.15□□□□□ -0.3
SRGAP1-205ENST00000542841 CYTH3O43739 400 aa13.15□□□□□ -0.3
SRGAP1-205ENST00000542841 PTK7Q13308 1070 aa13.15□□□□□ -0.3
SRGAP1-205ENST00000542841 DGKDQ16760 1214 aa13.15□□□□□ -0.3
SRGAP1-205ENST00000542841 TCTN1Q2MV58 587 aa13.15□□□□□ -0.3
SRGAP1-205ENST00000542841 PPP1R18Q6NYC8 613 aa13.15□□□□□ -0.3
SRGAP1-205ENST00000542841 CCDC62Q6P9F0 684 aa13.15□□□□□ -0.3
SRGAP1-205ENST00000542841 SEPT14Q6ZU15 432 aa13.15□□□□□ -0.3
SRGAP1-205ENST00000542841 FERMT3Q86UX7 667 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms