RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 RXRAP19793 462 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 COL9A1P20849 921 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 ARHGAP4P98171 946 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 SP4Q02446 784 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 NECTIN1Q15223 517 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 FAM26DQ5JW98 314 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 UTP14CQ5TAP6 766 aaKnown RBP13.05□□□□□ -0.32
VPS28-214ENST00000531032 CMTR1Q8N1G2 835 aaKnown RBP13.05□□□□□ -0.32
VPS28-214ENST00000531032 APBB2Q92870 758 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 TOP1MTQ969P6 601 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 CDHR1Q96JP9 859 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 ESYT1Q9BSJ8 1104 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 NRCAMQ92823 1304 aa13.05□□□□□ -0.32
VPS28-214ENST00000531032 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.04□□□□□ -0.32
VPS28-214ENST00000531032 ATP9AO75110 1047 aa13.04□□□□□ -0.32
VPS28-214ENST00000531032 TCF7P36402 384 aaPredicted RBP13.04□□□□□ -0.32
VPS28-214ENST00000531032 CREB3L3Q68CJ9 461 aa13.04□□□□□ -0.32
VPS28-214ENST00000531032 TMTC3Q6ZXV5 915 aa13.04□□□□□ -0.32
VPS28-214ENST00000531032 RPAINQ86UA6 219 aa13.04□□□□□ -0.32
VPS28-214ENST00000531032 SGMS1Q86VZ5 419 aa13.04□□□□□ -0.32
VPS28-214ENST00000531032 FBXO22Q8NEZ5 403 aa13.04□□□□□ -0.32
VPS28-214ENST00000531032 C17orf80Q9BSJ5 609 aa13.04□□□□□ -0.32
VPS28-214ENST00000531032 UBIAD1Q9Y5Z9 338 aa13.04□□□□□ -0.32
VPS28-214ENST00000531032 SLC12A7Q9Y666 1083 aa13.04□□□□□ -0.32
VPS28-214ENST00000531032 KAT6AQ92794 2004 aa13.04□□□□□ -0.32
VPS28-214ENST00000531032 CHRNA1P02708 482 aa13.03□□□□□ -0.32
VPS28-214ENST00000531032 MTMR1Q13613 665 aa13.03□□□□□ -0.32
VPS28-214ENST00000531032 UBE2SQ16763 222 aa13.03□□□□□ -0.32
VPS28-214ENST00000531032 TAF2Q6P1X5 1199 aa13.03□□□□□ -0.32
VPS28-214ENST00000531032 FANCBQ8NB91 859 aa13.03□□□□□ -0.32
VPS28-214ENST00000531032 SEPT1Q8WYJ6 367 aa13.03□□□□□ -0.32
VPS28-214ENST00000531032 SAMD11Q96NU1 681 aa13.03□□□□□ -0.32
VPS28-214ENST00000531032 YME1L1Q96TA2 773 aa13.03□□□□□ -0.32
VPS28-214ENST00000531032 IFIH1Q9BYX4 1025 aaKnown RBP13.03□□□□□ -0.32
VPS28-214ENST00000531032 ERAP1Q9NZ08 941 aa13.03□□□□□ -0.32
VPS28-214ENST00000531032 RALGAPA2Q2PPJ7 1873 aa13.03□□□□□ -0.32
VPS28-214ENST00000531032 NLRC5Q86WI3 1866 aa13.03□□□□□ -0.32
VPS28-214ENST00000531032 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.02□□□□□ -0.33
VPS28-214ENST00000531032 GSTTP1A0A1W2PQM5 241 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 hCG_1642624A0A1W2PR95 340 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 MBLAC1A4D2B0 266 aaPredicted RBP13.02□□□□□ -0.33
VPS28-214ENST00000531032 SPDYE3A6NKU9 549 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 MAFGO15525 162 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 MGAT3Q09327 533 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 PPFIA1Q13136 1202 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 EPC2Q52LR7 807 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 RUFY4Q6ZNE9 571 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 MICU3Q86XE3 530 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 RAB11FIP4Q86YS3 637 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 TEX2Q8IWB9 1127 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 MRPL38Q96DV4 380 aaKnown RBP13.02□□□□□ -0.33
VPS28-214ENST00000531032 C1QTNF1Q9BXJ1 281 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 LRRC2Q9BYS8 371 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 UBE2ZQ9H832 354 aaPredicted RBP13.02□□□□□ -0.33
VPS28-214ENST00000531032 EHMT1Q9H9B1 1298 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 ANO2Q9NQ90 1003 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 JADE2Q9NQC1 790 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 PCDHA6Q9UN73 950 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 PCDHA8Q9Y5H6 950 aa13.02□□□□□ -0.33
VPS28-214ENST00000531032 H3BNC9 293 aa13.01□□□□□ -0.33
VPS28-214ENST00000531032 UPP2O95045 317 aa13.01□□□□□ -0.33
VPS28-214ENST00000531032 GRIK4Q16099 956 aa13.01□□□□□ -0.33
VPS28-214ENST00000531032 PTPROQ16827 1216 aa13.01□□□□□ -0.33
VPS28-214ENST00000531032 MARCH8Q5T0T0 291 aa13.01□□□□□ -0.33
VPS28-214ENST00000531032 APOA5Q6Q788 366 aa13.01□□□□□ -0.33
VPS28-214ENST00000531032 HEATR3Q7Z4Q2 680 aa13.01□□□□□ -0.33
VPS28-214ENST00000531032 CCDC82Q8N4S0 544 aa13.01□□□□□ -0.33
VPS28-214ENST00000531032 SMARCAD1Q9H4L7 1026 aa13.01□□□□□ -0.33
VPS28-214ENST00000531032 TUBE1Q9UJT0 475 aa13.01□□□□□ -0.33
VPS28-214ENST00000531032 CNTNAP5Q8WYK1 1306 aa13.01□□□□□ -0.33
VPS28-214ENST00000531032 GHRP10912 638 aa13□□□□□ -0.33
VPS28-214ENST00000531032 MARK3P27448 753 aa13□□□□□ -0.33
VPS28-214ENST00000531032 LPIN1Q14693 890 aa13□□□□□ -0.33
VPS28-214ENST00000531032 LEXMQ3ZCV2 418 aa13□□□□□ -0.33
VPS28-214ENST00000531032 TIGD5Q53EQ6 642 aa13□□□□□ -0.33
VPS28-214ENST00000531032 BMP2KLQ5H9B9 411 aa13□□□□□ -0.33
VPS28-214ENST00000531032 RNF20Q5VTR2 975 aa13□□□□□ -0.33
VPS28-214ENST00000531032 WWC2Q6AWC2 1192 aa13□□□□□ -0.33
VPS28-214ENST00000531032 TYW1BQ6NUM6 668 aa13□□□□□ -0.33
VPS28-214ENST00000531032 RSPH3Q86UC2 560 aa13□□□□□ -0.33
VPS28-214ENST00000531032 TMEM192Q8IY95 271 aa13□□□□□ -0.33
VPS28-214ENST00000531032 GLG1Q92896 1179 aa13□□□□□ -0.33
VPS28-214ENST00000531032 RC3H2Q9HBD1 1191 aaKnown RBP13□□□□□ -0.33
VPS28-214ENST00000531032 JPH1Q9HDC5 661 aaPredicted RBP13□□□□□ -0.33
VPS28-214ENST00000531032 RBM28Q9NW13 759 aaKnown RBP13□□□□□ -0.33
VPS28-214ENST00000531032 PKD2L1Q9P0L9 805 aa13□□□□□ -0.33
VPS28-214ENST00000531032 RPLP2P05387 115 aaKnown RBP12.99□□□□□ -0.33
VPS28-214ENST00000531032 LINC00271P0C7V0 271 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 FUT2Q10981 343 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 GPM6BQ13491 265 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 FBXO47Q5MNV8 452 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 PPP1R18Q6NYC8 613 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 SYNE3Q6ZMZ3 975 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 DNAJB3Q8WWF6 145 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 IL17RAQ96F46 866 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 NEK1Q96PY6 1258 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 PCYT2Q99447 389 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 MXRA8Q9BRK3 442 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 RIC8AQ9NPQ8 531 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 KCNH7Q9NS40 1196 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms