RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 IFIT3O14879 490 aaKnown RBP16.51■□□□□ 0.23
CPSF1-201ENST00000526271 CHMLP26374 656 aa16.51■□□□□ 0.23
CPSF1-201ENST00000526271 GPM6BQ13491 265 aa16.51■□□□□ 0.23
CPSF1-201ENST00000526271 CAMK1Q14012 370 aa16.51■□□□□ 0.23
CPSF1-201ENST00000526271 MARCH8Q5T0T0 291 aa16.51■□□□□ 0.23
CPSF1-201ENST00000526271 UTP14CQ5TAP6 766 aaKnown RBP16.51■□□□□ 0.23
CPSF1-201ENST00000526271 CRIPAKQ8N1N5 446 aa16.51■□□□□ 0.23
CPSF1-201ENST00000526271 ARIH1Q9Y4X5 557 aaPredicted RBP16.51■□□□□ 0.23
CPSF1-201ENST00000526271 GSTTP1A0A1W2PQM5 241 aa16.5■□□□□ 0.23
CPSF1-201ENST00000526271 GRM6O15303 877 aa16.5■□□□□ 0.23
CPSF1-201ENST00000526271 PLEKHA8P1O95397 391 aa16.5■□□□□ 0.23
CPSF1-201ENST00000526271 KCNA2P16389 499 aa16.5■□□□□ 0.23
CPSF1-201ENST00000526271 GTF2F1P35269 517 aaKnown RBP eCLIP16.5■□□□□ 0.23
CPSF1-201ENST00000526271 LPIN1Q14693 890 aa16.5■□□□□ 0.23
CPSF1-201ENST00000526271 CTC1Q2NKJ3 1217 aa16.5■□□□□ 0.23
CPSF1-201ENST00000526271 BANK1Q8NDB2 785 aa16.5■□□□□ 0.23
CPSF1-201ENST00000526271 SEPT8Q92599 483 aa16.5■□□□□ 0.23
CPSF1-201ENST00000526271 PCYT2Q99447 389 aa16.5■□□□□ 0.23
CPSF1-201ENST00000526271 USP26Q9BXU7 913 aa16.5■□□□□ 0.23
CPSF1-201ENST00000526271 LY9Q9HBG7 655 aa16.5■□□□□ 0.23
CPSF1-201ENST00000526271 C19orf67A6NJJ6 358 aa16.49■□□□□ 0.23
CPSF1-201ENST00000526271 FIBPO43427 364 aa16.49■□□□□ 0.23
CPSF1-201ENST00000526271 CAND2O75155 1236 aa16.49■□□□□ 0.23
CPSF1-201ENST00000526271 ITGB5P18084 799 aa16.49■□□□□ 0.23
CPSF1-201ENST00000526271 ARHGAP4P98171 946 aa16.49■□□□□ 0.23
CPSF1-201ENST00000526271 SP4Q02446 784 aa16.49■□□□□ 0.23
CPSF1-201ENST00000526271 ZP2Q05996 745 aa16.49■□□□□ 0.23
CPSF1-201ENST00000526271 AAMPQ13685 434 aa16.49■□□□□ 0.23
CPSF1-201ENST00000526271 PCNX4Q63HM2 1172 aa16.49■□□□□ 0.23
CPSF1-201ENST00000526271 RTN4RL1Q86UN2 441 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-201ENST00000526271 CMTR1Q8N1G2 835 aaKnown RBP16.49■□□□□ 0.23
CPSF1-201ENST00000526271 ZNF689Q96CS4 500 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-201ENST00000526271 PABPC5Q96DU9 382 aaKnown RBP16.49■□□□□ 0.23
CPSF1-201ENST00000526271 YME1L1Q96TA2 773 aa16.49■□□□□ 0.23
CPSF1-201ENST00000526271 IFIH1Q9BYX4 1025 aaKnown RBP16.49■□□□□ 0.23
CPSF1-201ENST00000526271 AGO3Q9H9G7 860 aaKnown RBP16.49■□□□□ 0.23
CPSF1-201ENST00000526271 PLXNA4Q9HCM2 1894 aa16.49■□□□□ 0.23
CPSF1-201ENST00000526271 C5orf67F2Z3F1 127 aa16.48■□□□□ 0.23
CPSF1-201ENST00000526271 PIK3CDO00329 1044 aa16.48■□□□□ 0.23
CPSF1-201ENST00000526271 GHRP10912 638 aa16.48■□□□□ 0.23
CPSF1-201ENST00000526271 NEDD9Q14511 834 aa16.48■□□□□ 0.23
CPSF1-201ENST00000526271 WTAPQ15007 396 aa16.48■□□□□ 0.23
CPSF1-201ENST00000526271 RPAINQ86UA6 219 aa16.48■□□□□ 0.23
CPSF1-201ENST00000526271 SRBD1Q8N5C6 995 aaKnown RBP16.48■□□□□ 0.23
CPSF1-201ENST00000526271 SAMD11Q96NU1 681 aa16.48■□□□□ 0.23
CPSF1-201ENST00000526271 SENP7Q9BQF6 1050 aa16.48■□□□□ 0.23
CPSF1-201ENST00000526271 MBLAC1A4D2B0 266 aaPredicted RBP16.47■□□□□ 0.23
CPSF1-201ENST00000526271 NOP56O00567 594 aaKnown RBP16.47■□□□□ 0.23
CPSF1-201ENST00000526271 ENPP3O14638 875 aa16.47■□□□□ 0.23
CPSF1-201ENST00000526271 LINC01565O15544 149 aa16.47■□□□□ 0.23
CPSF1-201ENST00000526271 SGSM2O43147 1006 aa16.47■□□□□ 0.23
CPSF1-201ENST00000526271 TBX10O75333 385 aa16.47■□□□□ 0.23
CPSF1-201ENST00000526271 DNAJB1P25685 340 aa16.47■□□□□ 0.23
CPSF1-201ENST00000526271 TCF7P36402 384 aaPredicted RBP16.47■□□□□ 0.23
CPSF1-201ENST00000526271 HYAL1Q12794 435 aa16.47■□□□□ 0.23
CPSF1-201ENST00000526271 GNPTABQ3T906 1256 aa16.47■□□□□ 0.23
CPSF1-201ENST00000526271 TIGD5Q53EQ6 642 aa16.47■□□□□ 0.23
CPSF1-201ENST00000526271 ZNF654Q8IZM8 581 aa16.47■□□□□ 0.23
CPSF1-201ENST00000526271 SPZ1Q9BXG8 430 aa16.47■□□□□ 0.23
CPSF1-201ENST00000526271 NSUN3Q9H649 340 aaKnown RBP16.47■□□□□ 0.23
CPSF1-201ENST00000526271 hCG_1642624A0A1W2PR95 340 aa16.46■□□□□ 0.23
CPSF1-201ENST00000526271 PRR33A8MZF0 331 aa16.46■□□□□ 0.23
CPSF1-201ENST00000526271 STAM2O75886 525 aa16.46■□□□□ 0.23
CPSF1-201ENST00000526271 RXRAP19793 462 aa16.46■□□□□ 0.23
CPSF1-201ENST00000526271 UBE2SQ16763 222 aa16.46■□□□□ 0.23
CPSF1-201ENST00000526271 FBXO47Q5MNV8 452 aa16.46■□□□□ 0.23
CPSF1-201ENST00000526271 RAB11FIP4Q86YS3 637 aa16.46■□□□□ 0.23
CPSF1-201ENST00000526271 NCOA7Q8NI08 942 aa16.46■□□□□ 0.23
CPSF1-201ENST00000526271 MAP4K1Q92918 833 aa16.46■□□□□ 0.23
CPSF1-201ENST00000526271 CLP1Q92989 425 aaKnown RBP16.46■□□□□ 0.23
CPSF1-201ENST00000526271 HCN4Q9Y3Q4 1203 aa16.46■□□□□ 0.23
CPSF1-201ENST00000526271 UBIAD1Q9Y5Z9 338 aa16.46■□□□□ 0.23
CPSF1-201ENST00000526271 FNDC1Q4ZHG4 1894 aaPredicted RBP16.46■□□□□ 0.22
CPSF1-201ENST00000526271 MARK3P27448 753 aa16.45■□□□□ 0.22
CPSF1-201ENST00000526271 IRS1P35568 1242 aa16.45■□□□□ 0.22
CPSF1-201ENST00000526271 BMPR1AP36894 532 aa16.45■□□□□ 0.22
CPSF1-201ENST00000526271 TYW1BQ6NUM6 668 aa16.45■□□□□ 0.22
CPSF1-201ENST00000526271 CYP2W1Q8TAV3 490 aa16.45■□□□□ 0.22
CPSF1-201ENST00000526271 DNAJB3Q8WWF6 145 aa16.45■□□□□ 0.22
CPSF1-201ENST00000526271 APBB2Q92870 758 aa16.45■□□□□ 0.22
CPSF1-201ENST00000526271 IL17RAQ96F46 866 aa16.45■□□□□ 0.22
CPSF1-201ENST00000526271 U3KPZ7 1027 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-201ENST00000526271 EVPLQ92817 2033 aa16.45■□□□□ 0.22
CPSF1-201ENST00000526271 ADGRA3Q8IWK6 1321 aa16.45■□□□□ 0.22
CPSF1-201ENST00000526271 NRCAMQ92823 1304 aa16.45■□□□□ 0.22
CPSF1-201ENST00000526271 DGKIO75912 1065 aa16.44■□□□□ 0.22
CPSF1-201ENST00000526271 CTNNB1P35222 781 aa16.44■□□□□ 0.22
CPSF1-201ENST00000526271 GATMP50440 423 aa16.44■□□□□ 0.22
CPSF1-201ENST00000526271 TRDNQ13061 729 aa16.44■□□□□ 0.22
CPSF1-201ENST00000526271 GRIK4Q16099 956 aa16.44■□□□□ 0.22
CPSF1-201ENST00000526271 PTPROQ16827 1216 aa16.44■□□□□ 0.22
CPSF1-201ENST00000526271 ADGRD2Q7Z7M1 963 aa16.44■□□□□ 0.22
CPSF1-201ENST00000526271 FIBCD1Q8N539 461 aa16.44■□□□□ 0.22
CPSF1-201ENST00000526271 CLDND1Q9NY35 253 aa16.44■□□□□ 0.22
CPSF1-201ENST00000526271 PKD2L1Q9P0L9 805 aa16.44■□□□□ 0.22
CPSF1-201ENST00000526271 RBM8AQ9Y5S9 174 aaKnown RBP16.44■□□□□ 0.22
CPSF1-201ENST00000526271 CDY2AQ9Y6F7 541 aa16.44■□□□□ 0.22
CPSF1-201ENST00000526271 ZDBF2Q9HCK1 2354 aa16.43■□□□□ 0.22
CPSF1-201ENST00000526271 SH2B2O14492 632 aaPredicted RBP16.43■□□□□ 0.22
CPSF1-201ENST00000526271 MBTPS2O43462 519 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms