RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 CCDC148Q8NFR7 591 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 IL31RAQ8NI17 732 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 SMARCC2Q8TAQ2 1214 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 SPATA33Q96N06 139 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 UHRF1Q96T88 793 aaPredicted RBP11.6□□□□□ -0.55
VPS28-204ENST00000526054 GLT8D2Q9H1C3 349 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 SH2B1Q9NRF2 756 aaPredicted RBP11.6□□□□□ -0.55
VPS28-204ENST00000526054 BARHL2Q9NY43 387 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 MTCH2Q9Y6C9 303 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 SIP14410 1827 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 STK36Q9NRP7 1315 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 TRANK1O15050 2925 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 TCF20Q9UGU0 1960 aaKnown RBP11.59□□□□□ -0.55
VPS28-204ENST00000526054 DOCK5Q9H7D0 1870 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 MICAL3Q7RTP6 2002 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 STXBP3O00186 592 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 HAS3O00219 553 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 NBNO60934 754 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 LARGE1O95461 756 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 CXCL10P02778 98 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 HOXD8P13378 290 aaPredicted RBP11.59□□□□□ -0.55
VPS28-204ENST00000526054 CCND2P30279 289 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 ADCY7P51828 1080 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 DEFB103AP81534 67 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 PTK7Q13308 1070 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 GPNMBQ14956 572 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 AAK1Q2M2I8 961 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 HSDL1Q3SXM5 330 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 CELF3Q5SZQ8 465 aaKnown RBP11.59□□□□□ -0.55
VPS28-204ENST00000526054 MYSM1Q5VVJ2 828 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 TMCO2Q7Z6W1 182 aaPredicted RBP11.59□□□□□ -0.55
VPS28-204ENST00000526054 FCHSD1Q86WN1 690 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 NECAB1Q8N987 351 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 ZBED2Q9BTP6 218 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 PSTPIP2Q9H939 334 aa11.59□□□□□ -0.55
VPS28-204ENST00000526054 ABHD14A-ACY1A0A1B0GW23 586 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 LCHNA4D1U4 455 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 PIK3CDO00329 1044 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 EFCAB14O75071 495 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 PPFIA4O75335 1185 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 POU3F3P20264 500 aaPredicted RBP11.58□□□□□ -0.56
VPS28-204ENST00000526054 TFF2Q03403 129 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 PKN1Q16512 942 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 GNPTABQ3T906 1256 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 KRT40Q6A162 431 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 VSIG10LQ86VR7 867 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 WASF1Q92558 559 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 WNT8BQ93098 351 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 MLXIPQ9HAP2 919 aa11.58□□□□□ -0.56
VPS28-204ENST00000526054 ESYT2A0FGR8 921 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 SMCO2A6NFE2 343 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 SPDYE3A6NKU9 549 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 NOP56O00567 594 aaKnown RBP11.57□□□□□ -0.56
VPS28-204ENST00000526054 PPFIA3O75145 1194 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 GJB5O95377 273 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 TGFB3P10600 412 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 XBP1P17861 261 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 GNA11P29992 359 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 KCNQ1P51787 676 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 ZNF200P98182 395 aaPredicted RBP11.57□□□□□ -0.56
VPS28-204ENST00000526054 SP2Q02086 613 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 GRB10Q13322 594 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 IKBKEQ14164 716 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 TRIM71Q2Q1W2 868 aaKnown RBP11.57□□□□□ -0.56
VPS28-204ENST00000526054 ZNF618Q5T7W0 954 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 TYW1BQ6NUM6 668 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 TRAF7Q6Q0C0 670 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 SPRED2Q7Z698 418 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 CCDC83Q8IWF9 413 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 FAM177A1Q8N128 213 aaPredicted RBP11.57□□□□□ -0.56
VPS28-204ENST00000526054 GDPD5Q8WTR4 605 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 ZFP91Q96JP5 570 aaPredicted RBP11.57□□□□□ -0.56
VPS28-204ENST00000526054 C16orf70Q9BSU1 422 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 EHMT1Q9H9B1 1298 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 C6orf50Q9HD87 102 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 RIC8AQ9NPQ8 531 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 SH3GLB2Q9NR46 395 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 ORC3Q9UBD5 711 aaPredicted RBP11.57□□□□□ -0.56
VPS28-204ENST00000526054 FRMPD4Q14CM0 1322 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 EMSYQ7Z589 1322 aa11.57□□□□□ -0.56
VPS28-204ENST00000526054 C17orf102A2RUQ5 167 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 XIRP2A4UGR9 3374 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 MEIS2O14770 477 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 LGR5O75473 907 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 CTDNEP1O95476 244 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 LGALS2P05162 132 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 THPOP40225 353 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 HIC1Q14526 733 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 MBTPS1Q14703 1052 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 UBE2SQ16763 222 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 TCTN1Q2MV58 587 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 USP17L6PQ6QN14 398 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 SERINC5Q86VE9 423 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 NSUN7Q8NE18 718 aaKnown RBP11.56□□□□□ -0.56
VPS28-204ENST00000526054 BICD2Q8TD16 824 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 NECAB3Q96P71 396 aaPredicted RBP11.56□□□□□ -0.56
VPS28-204ENST00000526054 LLPHQ9BRT6 129 aaKnown RBP11.56□□□□□ -0.56
VPS28-204ENST00000526054 ZMYND12Q9H0C1 365 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 VPS54Q9P1Q0 977 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 MTUS1Q9ULD2 1270 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms