RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 ZNF589Q86UQ0 364 aaPredicted RBP12.73□□□□□ -0.37
DDX41-216ENST00000513562 LMBR1Q8WVP7 490 aa12.73□□□□□ -0.37
DDX41-216ENST00000513562 ATOH1Q92858 354 aaPredicted RBP12.73□□□□□ -0.37
DDX41-216ENST00000513562 PHF7Q9BWX1 381 aaPredicted RBP12.73□□□□□ -0.37
DDX41-216ENST00000513562 AMNQ9BXJ7 453 aa12.73□□□□□ -0.37
DDX41-216ENST00000513562 USP26Q9BXU7 913 aa12.73□□□□□ -0.37
DDX41-216ENST00000513562 KAT14Q9H8E8 782 aa12.73□□□□□ -0.37
DDX41-216ENST00000513562 USP15Q9Y4E8 981 aaPredicted RBP12.73□□□□□ -0.37
DDX41-216ENST00000513562 DMDP11532 3685 aa12.73□□□□□ -0.37
DDX41-216ENST00000513562 PROB1E7EW31 1015 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 NOP56O00567 594 aaKnown RBP12.72□□□□□ -0.37
DDX41-216ENST00000513562 ENPP3O14638 875 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 DHX16O60231 1041 aaKnown RBP12.72□□□□□ -0.37
DDX41-216ENST00000513562 PPP1R11O60927 126 aaPredicted RBP12.72□□□□□ -0.37
DDX41-216ENST00000513562 GLP2RO95838 553 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 PARP1P09874 1014 aaKnown RBP12.72□□□□□ -0.37
DDX41-216ENST00000513562 AVPR2P30518 371 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 ICAM3P32942 547 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 MGAT3Q09327 533 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 LPIN1Q14693 890 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 CCDC178Q5BJE1 867 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 IQCA1Q86XH1 822 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 TRIM50Q86XT4 487 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 SAMD3Q8N6K7 520 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 SPPL3Q8TCT6 385 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 GPR20Q99678 358 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 BCAS3Q9H6U6 928 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 VAT1LQ9HCJ6 419 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 RCAN3Q9UKA8 241 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 ZNF215Q9UL58 517 aaPredicted RBP12.72□□□□□ -0.37
DDX41-216ENST00000513562 BARX2Q9UMQ3 279 aaPredicted RBP12.72□□□□□ -0.37
DDX41-216ENST00000513562 MRPL42Q9Y6G3 142 aaKnown RBP12.72□□□□□ -0.37
DDX41-216ENST00000513562 KIAA1217Q5T5P2 1943 aa12.72□□□□□ -0.37
DDX41-216ENST00000513562 ZFHX2Q9C0A1 2572 aaPredicted RBP12.71□□□□□ -0.37
DDX41-216ENST00000513562 ITGB1P05556 798 aa12.71□□□□□ -0.37
DDX41-216ENST00000513562 HOXA13P31271 388 aaPredicted RBP12.71□□□□□ -0.37
DDX41-216ENST00000513562 NUBP1P53384 320 aa12.71□□□□□ -0.37
DDX41-216ENST00000513562 ARHGAP4P98171 946 aa12.71□□□□□ -0.37
DDX41-216ENST00000513562 TAF2Q6P1X5 1199 aa12.71□□□□□ -0.37
DDX41-216ENST00000513562 TICAM2Q86XR7 235 aa12.71□□□□□ -0.37
DDX41-216ENST00000513562 CMTR2Q8IYT2 770 aaKnown RBP12.71□□□□□ -0.37
DDX41-216ENST00000513562 CRIPAKQ8N1N5 446 aa12.71□□□□□ -0.37
DDX41-216ENST00000513562 LINC01599Q8WXQ3 324 aa12.71□□□□□ -0.37
DDX41-216ENST00000513562 SUSD6Q92537 303 aa12.71□□□□□ -0.37
DDX41-216ENST00000513562 MTMR8Q96EF0 704 aa12.71□□□□□ -0.37
DDX41-216ENST00000513562 ZFP91Q96JP5 570 aaPredicted RBP12.71□□□□□ -0.37
DDX41-216ENST00000513562 ATG2AQ2TAZ0 1938 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 NLRC5Q86WI3 1866 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 KMT2EQ8IZD2 1858 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 NRCAMQ92823 1304 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 ZBTB5O15062 677 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 KDM4AO75164 1064 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 ATF7P17544 494 aaPredicted RBP12.7□□□□□ -0.38
DDX41-216ENST00000513562 NRIP1P48552 1158 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 NEDD9Q14511 834 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 PTPN21Q16825 1174 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 GNPTABQ3T906 1256 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 RUFY4Q6ZNE9 571 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 CYFIP1Q7L576 1253 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 ENAHQ8N8S7 591 aaPredicted RBP12.7□□□□□ -0.38
DDX41-216ENST00000513562 KLHL23Q8NBE8 558 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 RPGRIP1Q96KN7 1286 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 INPP4AQ96PE3 977 aaPredicted RBP12.7□□□□□ -0.38
DDX41-216ENST00000513562 ZSCAN10Q96SZ4 725 aaPredicted RBP12.7□□□□□ -0.38
DDX41-216ENST00000513562 SUPT16HQ9Y5B9 1047 aaKnown RBP12.7□□□□□ -0.38
DDX41-216ENST00000513562 PCDHA1Q9Y5I3 950 aa12.7□□□□□ -0.38
DDX41-216ENST00000513562 FRMPD4Q14CM0 1322 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 TRIM6-TRIM34B2RNG4 842 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 SPATA31C2B4DYI2 1134 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 H0Y858 1186 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 GCOM1H8Y6P7 765 aaPredicted RBP12.69□□□□□ -0.38
DDX41-216ENST00000513562 STAM2O75886 525 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 POLR2MP0CAP2 368 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 MRPS9P82933 396 aaKnown RBP12.69□□□□□ -0.38
DDX41-216ENST00000513562 SEMA3FQ13275 785 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 NMIQ13287 307 aaPredicted RBP12.69□□□□□ -0.38
DDX41-216ENST00000513562 FBXO47Q5MNV8 452 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 TSHZ1Q6ZSZ6 1077 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 STAG2Q8N3U4 1231 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 POF1BQ8WVV4 589 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 TLR9Q9NR96 1032 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 TELO2Q9Y4R8 837 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 DCHS1Q96JQ0 3298 aa12.69□□□□□ -0.38
DDX41-216ENST00000513562 ZNF213O14771 459 aa12.68□□□□□ -0.38
DDX41-216ENST00000513562 FIBPO43427 364 aa12.68□□□□□ -0.38
DDX41-216ENST00000513562 UTP14CQ5TAP6 766 aaKnown RBP12.68□□□□□ -0.38
DDX41-216ENST00000513562 ASCL5Q7RTU5 278 aa12.68□□□□□ -0.38
DDX41-216ENST00000513562 RBM23Q86U06 439 aaKnown RBP12.68□□□□□ -0.38
DDX41-216ENST00000513562 RSPH3Q86UC2 560 aa12.68□□□□□ -0.38
DDX41-216ENST00000513562 FCHSD1Q86WN1 690 aa12.68□□□□□ -0.38
DDX41-216ENST00000513562 NPAS4Q8IUM7 802 aa12.68□□□□□ -0.38
DDX41-216ENST00000513562 VN1R2Q8NFZ6 395 aa12.68□□□□□ -0.38
DDX41-216ENST00000513562 ATP8B4Q8TF62 1192 aa12.68□□□□□ -0.38
DDX41-216ENST00000513562 PCDHGC5Q9Y5F6 944 aa12.68□□□□□ -0.38
DDX41-216ENST00000513562 FSD2A1L4K1 749 aa12.67□□□□□ -0.38
DDX41-216ENST00000513562 MBLAC1A4D2B0 266 aaPredicted RBP12.67□□□□□ -0.38
DDX41-216ENST00000513562 PRR23AA6NEV1 266 aa12.67□□□□□ -0.38
DDX41-216ENST00000513562 B4E1Z4 1266 aa12.67□□□□□ -0.38
DDX41-216ENST00000513562 GALR2O43603 387 aaPredicted RBP12.67□□□□□ -0.38
DDX41-216ENST00000513562 PDGFBP01127 241 aaPredicted RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms