RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 FGBP02675 491 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 HMGB1P09429 215 aaKnown RBP12.25□□□□□ -0.45
COL6A3-214ENST00000493608 TGFB3P10600 412 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 SMAD3P84022 425 aaKnown RBP12.25□□□□□ -0.45
COL6A3-214ENST00000493608 ZNF200P98182 395 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-214ENST00000493608 FUT2Q10981 343 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 PTGISQ16647 500 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 ZNF697Q5TEC3 545 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 WWC2Q6AWC2 1192 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 GDF6Q6KF10 455 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-214ENST00000493608 KCNV1Q6PIU1 500 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 BLOC1S2Q6QNY1 142 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 CYFIP1Q7L576 1253 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 BRF1Q92994 677 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 VWCEQ96DN2 955 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 SEMA6BQ9H3T3 888 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 CXXC1Q9P0U4 656 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-214ENST00000493608 HDAC6Q9UBN7 1215 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 NOD1Q9Y239 953 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 FRMPD4Q14CM0 1322 aa12.25□□□□□ -0.45
COL6A3-214ENST00000493608 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-214ENST00000493608 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-214ENST00000493608 SPATA31C2B4DYI2 1134 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 PPFIA4O75335 1185 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 REC8O95072 547 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 RPS6KB1P23443 525 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 NAPAP54920 295 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 SP4Q02446 784 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 PTPN11Q06124 597 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-214ENST00000493608 KIAA0753Q2KHM9 967 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 PCNX4Q63HM2 1172 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 PSRC1Q6PGN9 363 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-214ENST00000493608 C7orf31Q8N865 590 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 PGBD1Q96JS3 809 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 GUCD1Q96NT3 240 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 INPP4AQ96PE3 977 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-214ENST00000493608 TTYH1Q9H313 450 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-214ENST00000493608 PKD2L1Q9P0L9 805 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 PCDHA6Q9UN73 950 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 PCDHA8Q9Y5H6 950 aa12.24□□□□□ -0.45
COL6A3-214ENST00000493608 KAT6AQ92794 2004 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 GBF1Q92538 1859 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 SPDYE3A6NKU9 549 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 HAS3O00219 553 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 IQCF3P0C7M6 154 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 ICAM3P32942 547 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 METAP2P50579 478 aaKnown RBP eCLIP12.23□□□□□ -0.45
COL6A3-214ENST00000493608 PTGDRQ13258 359 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 HIC1Q14526 733 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 GNPTABQ3T906 1256 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 RETREG2Q8NC44 543 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 HERVK_113Q902F9 699 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 CTAGE1Q96RT6 745 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 USP26Q9BXU7 913 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 GTF2IRD1Q9UHL9 959 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 COL6A3P12111 3177 aa12.23□□□□□ -0.45
COL6A3-214ENST00000493608 SMCO2A6NFE2 343 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 ZBBXA8MT70 800 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 STXBP3O00186 592 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 NOP56O00567 594 aaKnown RBP12.22□□□□□ -0.45
COL6A3-214ENST00000493608 FIBPO43427 364 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 ATP9AO75110 1047 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 STAM2O75886 525 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 F2P00734 622 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 ITGB5P18084 799 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 PSMA5P28066 241 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 CCT2P78371 535 aaKnown RBP12.22□□□□□ -0.45
COL6A3-214ENST00000493608 NEDD9Q14511 834 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 UTP14CQ5TAP6 766 aaKnown RBP12.22□□□□□ -0.45
COL6A3-214ENST00000493608 RASIP1Q5U651 963 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 NLRX1Q86UT6 975 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 RPUSD2Q8IZ73 545 aaKnown RBP12.22□□□□□ -0.45
COL6A3-214ENST00000493608 DHX38Q92620 1227 aaKnown RBP12.22□□□□□ -0.45
COL6A3-214ENST00000493608 CDX2Q99626 313 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-214ENST00000493608 C16orf70Q9BSU1 422 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 KATNAL1Q9BW62 490 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 TMEM260Q9NX78 707 aa12.22□□□□□ -0.45
COL6A3-214ENST00000493608 H3BRB1 525 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 ADAMTS3O15072 1205 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 LGALS2P05162 132 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 HOXD8P13378 290 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-214ENST00000493608 DNAJB2P25686 324 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 RABGGTBP53611 331 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 KCNC4Q03721 635 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 BFSP2Q13515 415 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 XRRA1Q6P2D8 792 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 METTL7BQ6UX53 244 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 SESTD1Q86VW0 696 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 TRIM50Q86XT4 487 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 CYP2W1Q8TAV3 490 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 WNT8BQ93098 351 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 PHKBQ93100 1093 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 GPR20Q99678 358 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 PBX4Q9BYU1 374 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 FTOQ9C0B1 505 aaKnown RBP eCLIP12.21□□□□□ -0.45
COL6A3-214ENST00000493608 TUT1Q9H6E5 874 aaKnown RBP12.21□□□□□ -0.45
COL6A3-214ENST00000493608 RIC8AQ9NPQ8 531 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 STXBP5LQ9Y2K9 1186 aa12.21□□□□□ -0.45
COL6A3-214ENST00000493608 ADCY7P51828 1080 aa12.2□□□□□ -0.46
COL6A3-214ENST00000493608 TOB2Q14106 344 aaPredicted RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms