RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 CASC1Q6TDU7 716 aa7.18□□□□□ -1.26
PTCD3-215ENST00000484203 NSMFQ6X4W1 530 aa7.18□□□□□ -1.26
PTCD3-215ENST00000484203 NOL8Q76FK4 1167 aaKnown RBP7.18□□□□□ -1.26
PTCD3-215ENST00000484203 RALYLQ86SE5 291 aaKnown RBP7.18□□□□□ -1.26
PTCD3-215ENST00000484203 TBC1D10CQ8IV04 446 aa7.18□□□□□ -1.26
PTCD3-215ENST00000484203 CCDC144CPQ8IYA2 1237 aa7.18□□□□□ -1.26
PTCD3-215ENST00000484203 SAMD3Q8N6K7 520 aa7.18□□□□□ -1.26
PTCD3-215ENST00000484203 ZSCAN1Q8NBB4 408 aa7.18□□□□□ -1.26
PTCD3-215ENST00000484203 ZDHHC1Q8WTX9 485 aa7.18□□□□□ -1.26
PTCD3-215ENST00000484203 MTA3Q9BTC8 594 aa7.18□□□□□ -1.26
PTCD3-215ENST00000484203 AP5M1Q9H0R1 490 aa7.18□□□□□ -1.26
PTCD3-215ENST00000484203 STARD7Q9NQZ5 370 aa7.18□□□□□ -1.26
PTCD3-215ENST00000484203 CUEDC1Q9NWM3 386 aaPredicted RBP7.18□□□□□ -1.26
PTCD3-215ENST00000484203 MAP3K20Q9NYL2 800 aaKnown RBP7.18□□□□□ -1.26
PTCD3-215ENST00000484203 ZMYND8Q9ULU4 1186 aaPredicted RBP7.18□□□□□ -1.26
PTCD3-215ENST00000484203 ATP11BQ9Y2G3 1177 aa7.18□□□□□ -1.26
PTCD3-215ENST00000484203 ZNF536O15090 1300 aa7.18□□□□□ -1.26
PTCD3-215ENST00000484203 A0A1W2PQ45 241 aaPredicted RBP7.17□□□□□ -1.26
PTCD3-215ENST00000484203 A0A1W2PQY0 241 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 NKRFO15226 690 aaKnown RBP eCLIP7.17□□□□□ -1.26
PTCD3-215ENST00000484203 TLR3O15455 904 aaKnown RBP7.17□□□□□ -1.26
PTCD3-215ENST00000484203 KPNA6O60684 536 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 ADAMTS4O75173 837 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 PGK1P00558 417 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 PARP1P09874 1014 aaKnown RBP7.17□□□□□ -1.26
PTCD3-215ENST00000484203 C6orf222P0C671 652 aaPredicted RBP7.17□□□□□ -1.26
PTCD3-215ENST00000484203 VSIG8P0DPA2 414 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 CHMLP26374 656 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 ACLYP53396 1101 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 TNFAIP2Q03169 654 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 SWI5Q1ZZU3 235 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 RNF207Q6ZRF8 634 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 ANKRD33Q7Z3H0 272 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 PGBD3Q8N328 593 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 TMTC2Q8N394 836 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 VWA5B2Q8N398 1253 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 KLHDC9Q8NEP7 349 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 MORC4Q8TE76 937 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 UPF3AQ9H1J1 476 aaKnown RBP7.17□□□□□ -1.26
PTCD3-215ENST00000484203 RUBCNLQ9H714 662 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 INCENPQ9NQS7 918 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 ZSWIM5Q9P217 1185 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 MTMR7Q9Y216 660 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 MRPL11Q9Y3B7 192 aaKnown RBP7.17□□□□□ -1.26
PTCD3-215ENST00000484203 ABCB11O95342 1321 aa7.17□□□□□ -1.26
PTCD3-215ENST00000484203 ATAD5Q96QE3 1844 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 ZNF236Q9UL36 1845 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 A0A0U1RQG5 324 aaPredicted RBP7.16□□□□□ -1.26
PTCD3-215ENST00000484203 PTPDC1A2A3K4 754 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 B4E1Z4 1266 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 KIAA0355O15063 1070 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 SGSM2O43147 1006 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 DHX16O60231 1041 aaKnown RBP7.16□□□□□ -1.26
PTCD3-215ENST00000484203 CLTBP09497 229 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 GSPT1P15170 499 aaKnown RBP7.16□□□□□ -1.26
PTCD3-215ENST00000484203 TAL1P17542 331 aaPredicted RBP7.16□□□□□ -1.26
PTCD3-215ENST00000484203 SYN1P17600 705 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 KIF5BP33176 963 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 SLC16A2P36021 539 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 CPT1AP50416 773 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 CNTN2Q02246 1040 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 TLE2Q04725 743 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 BAATQ14032 418 aaPredicted RBP7.16□□□□□ -1.26
PTCD3-215ENST00000484203 KCNA10Q16322 511 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 DBN1Q16643 649 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 SH3PXD2AQ5TCZ1 1133 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 ANO1Q5XXA6 986 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 SV2AQ7L0J3 742 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 CENPQQ7L2Z9 268 aaPredicted RBP7.16□□□□□ -1.26
PTCD3-215ENST00000484203 CATIPQ7Z7H3 387 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 TRIM22Q8IYM9 498 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 ENAHQ8N8S7 591 aaPredicted RBP7.16□□□□□ -1.26
PTCD3-215ENST00000484203 NCOA7Q8NI08 942 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 NSUN6Q8TEA1 469 aaKnown RBP7.16□□□□□ -1.26
PTCD3-215ENST00000484203 SCFD2Q8WU76 684 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 VTI1AQ96AJ9 217 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 IWS1Q96ST2 819 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 HCN4Q9Y3Q4 1203 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 TNKSO95271 1327 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 NEDD4P46934 1319 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 FRMPD2Q68DX3 1309 aaPredicted RBP7.16□□□□□ -1.26
PTCD3-215ENST00000484203 SYNRGQ9UMZ2 1314 aa7.16□□□□□ -1.26
PTCD3-215ENST00000484203 ARVCFO00192 962 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 EML1O00423 815 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 IFIT3O14879 490 aaKnown RBP7.15□□□□□ -1.26
PTCD3-215ENST00000484203 PRMT3O60678 531 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 SUPT20HL2P0C7V6 817 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 RAG1P15918 1043 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 IGFBP4P22692 258 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 TXLNAP40222 546 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 GNAQP50148 359 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 RPS6P62753 249 aaKnown RBP7.15□□□□□ -1.26
PTCD3-215ENST00000484203 CDC37Q16543 378 aaPredicted RBP7.15□□□□□ -1.26
PTCD3-215ENST00000484203 FSCN1Q16658 493 aaKnown RBP7.15□□□□□ -1.26
PTCD3-215ENST00000484203 TRIM60Q495X7 471 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 DUSP28Q4G0W2 176 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 ARSJQ5FYB0 599 aaPredicted RBP7.15□□□□□ -1.26
PTCD3-215ENST00000484203 BMP2KLQ5H9B9 411 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 MUM1L1Q5H9M0 696 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 FAM109BQ6ICB4 259 aaPredicted RBP7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms