RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 CCDC83Q8IWF9 413 aa21.24■□□□□ 0.99
USP39-209ENST00000458268 TBCKQ8TEA7 893 aa21.24■□□□□ 0.99
USP39-209ENST00000458268 ATP6V0A1Q93050 837 aa21.24■□□□□ 0.99
USP39-209ENST00000458268 ZNF577Q9BSK1 485 aa21.24■□□□□ 0.99
USP39-209ENST00000458268 FTOQ9C0B1 505 aaKnown RBP eCLIP21.24■□□□□ 0.99
USP39-209ENST00000458268 SETD4Q9NVD3 440 aa21.24■□□□□ 0.99
USP39-209ENST00000458268 ZBBXA8MT70 800 aa21.23■□□□□ 0.99
USP39-209ENST00000458268 RBAK-RBAKDNI3L0D1 243 aa21.23■□□□□ 0.99
USP39-209ENST00000458268 HIC1Q14526 733 aa21.23■□□□□ 0.99
USP39-209ENST00000458268 TMEM240Q5SV17 173 aa21.23■□□□□ 0.99
USP39-209ENST00000458268 SESTD1Q86VW0 696 aa21.23■□□□□ 0.99
USP39-209ENST00000458268 WASF1Q92558 559 aa21.23■□□□□ 0.99
USP39-209ENST00000458268 AZI2Q9H6S1 392 aa21.23■□□□□ 0.99
USP39-209ENST00000458268 BACH1O14867 736 aa21.22■□□□□ 0.99
USP39-209ENST00000458268 FGBP02675 491 aa21.22■□□□□ 0.99
USP39-209ENST00000458268 CYP3A4P08684 503 aa21.22■□□□□ 0.99
USP39-209ENST00000458268 ACTR2P61160 394 aa21.22■□□□□ 0.99
USP39-209ENST00000458268 IGBP1P78318 339 aa21.22■□□□□ 0.99
USP39-209ENST00000458268 SETQ01105 290 aaPredicted RBP21.22■□□□□ 0.99
USP39-209ENST00000458268 C16orf59Q7L2K0 433 aa21.22■□□□□ 0.99
USP39-209ENST00000458268 NSUN7Q8NE18 718 aaKnown RBP21.22■□□□□ 0.99
USP39-209ENST00000458268 DHX38Q92620 1227 aaKnown RBP21.22■□□□□ 0.99
USP39-209ENST00000458268 RNPEPQ9H4A4 650 aa21.22■□□□□ 0.99
USP39-209ENST00000458268 LIMCH1Q9UPQ0 1083 aa21.22■□□□□ 0.99
USP39-209ENST00000458268 GTF3C3Q9Y5Q9 886 aa21.22■□□□□ 0.99
USP39-209ENST00000458268 IGLV3-22A0A075B6J6 115 aa21.21■□□□□ 0.99
USP39-209ENST00000458268 CCDC194A0A1B0GVG4 234 aa21.21■□□□□ 0.99
USP39-209ENST00000458268 IPO5O00410 1097 aaKnown RBP21.21■□□□□ 0.99
USP39-209ENST00000458268 TREHO43280 583 aa21.21■□□□□ 0.99
USP39-209ENST00000458268 NONOQ15233 471 aaKnown RBP eCLIP21.21■□□□□ 0.99
USP39-209ENST00000458268 INF2Q27J81 1249 aa21.21■□□□□ 0.99
USP39-209ENST00000458268 Q7L0L9 218 aa21.21■□□□□ 0.99
USP39-209ENST00000458268 NIPA1Q7RTP0 329 aa21.21■□□□□ 0.99
USP39-209ENST00000458268 TRMT1LQ7Z2T5 733 aaKnown RBP21.21■□□□□ 0.99
USP39-209ENST00000458268 RPUSD2Q8IZ73 545 aaKnown RBP21.21■□□□□ 0.99
USP39-209ENST00000458268 WNT8BQ93098 351 aa21.21■□□□□ 0.99
USP39-209ENST00000458268 TRPC6Q9Y210 931 aa21.21■□□□□ 0.99
USP39-209ENST00000458268 NFASCO94856 1347 aa21.21■□□□□ 0.99
USP39-209ENST00000458268 CTSHP09668 335 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 IQCF3P0C7M6 154 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 THPOP40225 353 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 PPFIA1Q13136 1202 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 PTK7Q13308 1070 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 TRIM29Q14134 588 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 LRRC8DQ7L1W4 858 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 KRT25Q7Z3Z0 450 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 DAGLBQ8NCG7 672 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 CAGE1Q8TC20 777 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 OXER1Q8TDS5 423 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 CRYGNQ8WXF5 182 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 FAM161BQ96MY7 647 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 CTAGE1Q96RT6 745 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 KIF2CQ99661 725 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 PHF20Q9BVI0 1012 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 SMARCAD1Q9H4L7 1026 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 ERAP1Q9NZ08 941 aa21.2■□□□□ 0.98
USP39-209ENST00000458268 PITPNM1O00562 1244 aa21.19■□□□□ 0.98
USP39-209ENST00000458268 CHMP2AO43633 222 aa21.19■□□□□ 0.98
USP39-209ENST00000458268 TDP2O95551 362 aa21.19■□□□□ 0.98
USP39-209ENST00000458268 CKBP12277 381 aa21.19■□□□□ 0.98
USP39-209ENST00000458268 FDPSP14324 419 aaKnown RBP21.19■□□□□ 0.98
USP39-209ENST00000458268 SELPP16109 830 aa21.19■□□□□ 0.98
USP39-209ENST00000458268 ST3GAL1Q11201 340 aa21.19■□□□□ 0.98
USP39-209ENST00000458268 LETM2Q2VYF4 491 aa21.19■□□□□ 0.98
USP39-209ENST00000458268 GALNT17Q6IS24 598 aa21.19■□□□□ 0.98
USP39-209ENST00000458268 AFAP1L1Q8TED9 768 aa21.19■□□□□ 0.98
USP39-209ENST00000458268 GJA10Q969M2 543 aa21.19■□□□□ 0.98
USP39-209ENST00000458268 MTIF3Q9H2K0 278 aaKnown RBP21.19■□□□□ 0.98
USP39-209ENST00000458268 BRMS1Q9HCU9 246 aa21.19■□□□□ 0.98
USP39-209ENST00000458268 SAMM50Q9Y512 469 aa21.19■□□□□ 0.98
USP39-209ENST00000458268 CCNE2O96020 404 aa21.18■□□□□ 0.98
USP39-209ENST00000458268 GNAT1P11488 350 aa21.18■□□□□ 0.98
USP39-209ENST00000458268 RBM25P49756 843 aaKnown RBP21.18■□□□□ 0.98
USP39-209ENST00000458268 GUCY1B3Q02153 619 aa21.18■□□□□ 0.98
USP39-209ENST00000458268 NPY5RQ15761 445 aa21.18■□□□□ 0.98
USP39-209ENST00000458268 ZNF618Q5T7W0 954 aa21.18■□□□□ 0.98
USP39-209ENST00000458268 FAM109BQ6ICB4 259 aaPredicted RBP21.18■□□□□ 0.98
USP39-209ENST00000458268 PIK3AP1Q6ZUJ8 805 aa21.18■□□□□ 0.98
USP39-209ENST00000458268 LMBR1Q8WVP7 490 aa21.18■□□□□ 0.98
USP39-209ENST00000458268 PCYT2Q99447 389 aa21.18■□□□□ 0.98
USP39-209ENST00000458268 CXXC1Q9P0U4 656 aaPredicted RBP21.18■□□□□ 0.98
USP39-209ENST00000458268 EMSYQ7Z589 1322 aa21.18■□□□□ 0.98
USP39-209ENST00000458268 MYH9P35579 1960 aaKnown RBP21.17■□□□□ 0.98
USP39-209ENST00000458268 GRXCR1A8MXD5 290 aa21.17■□□□□ 0.98
USP39-209ENST00000458268 KRT2P35908 639 aa21.17■□□□□ 0.98
USP39-209ENST00000458268 STAT5BP51692 787 aa21.17■□□□□ 0.98
USP39-209ENST00000458268 RABEP1Q15276 862 aa21.17■□□□□ 0.98
USP39-209ENST00000458268 GRIK4Q16099 956 aa21.17■□□□□ 0.98
USP39-209ENST00000458268 MIS18BP1Q6P0N0 1132 aa21.17■□□□□ 0.98
USP39-209ENST00000458268 CKAP2LQ8IYA6 745 aa21.17■□□□□ 0.98
USP39-209ENST00000458268 DEFB123Q8N688 67 aa21.17■□□□□ 0.98
USP39-209ENST00000458268 ZBTB10Q96DT7 871 aa21.17■□□□□ 0.98
USP39-209ENST00000458268 TBC1D22BQ9NU19 505 aa21.17■□□□□ 0.98
USP39-209ENST00000458268 TET1Q8NFU7 2136 aa21.17■□□□□ 0.98
USP39-209ENST00000458268 GBF1Q92538 1859 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 MSH4O15457 936 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 ST18O60284 1047 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 GAS7O60861 476 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 SLC34A2O95436 690 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 ACTN1P12814 892 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms