RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-209ENST00000451859 NLRC5Q86WI3 1866 aa9.98□□□□□ -0.81
RFX3-209ENST00000451859 COL4A4P53420 1690 aaPredicted RBP9.97□□□□□ -0.81
RFX3-209ENST00000451859 MEIS2O14770 477 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 IQCF3P0C7M6 154 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 FOSL2P15408 326 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 SMARCA1P28370 1054 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 NAPAP54920 295 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 ZNF200P98182 395 aaPredicted RBP9.97□□□□□ -0.81
RFX3-209ENST00000451859 SEMA3FQ13275 785 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 GRIN2CQ14957 1233 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 UTP14CQ5TAP6 766 aaKnown RBP9.97□□□□□ -0.81
RFX3-209ENST00000451859 KCNV1Q6PIU1 500 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 CYFIP1Q7L576 1253 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 SGMS1Q86VZ5 419 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 EMID1Q96A84 441 aaPredicted RBP9.97□□□□□ -0.81
RFX3-209ENST00000451859 KATNAL1Q9BW62 490 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 NKX2-4Q9H2Z4 354 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 ZNF576Q9H609 170 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 PSTPIP2Q9H939 334 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 GTF2IRD1Q9UHL9 959 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 SLC4A7Q9Y6M7 1214 aa9.97□□□□□ -0.81
RFX3-209ENST00000451859 SPDYE3A6NKU9 549 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 FIBPO43427 364 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 F2P00734 622 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 LGALS2P05162 132 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 MYOGP15173 224 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 EXOSC10Q01780 885 aaKnown RBP9.96□□□□□ -0.82
RFX3-209ENST00000451859 APOBRQ0VD83 1088 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 KRT32Q14532 448 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 LAPTM4AQ15012 233 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 RASIP1Q5U651 963 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 WWC2Q6AWC2 1192 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 Q6ZUG5 572 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 TRIM50Q86XT4 487 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 CCDC155Q8N6L0 562 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 MAFAQ8NHW3 353 aaPredicted RBP9.96□□□□□ -0.82
RFX3-209ENST00000451859 DHX38Q92620 1227 aaKnown RBP9.96□□□□□ -0.82
RFX3-209ENST00000451859 VWCEQ96DN2 955 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 PGBD1Q96JS3 809 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 INPP4AQ96PE3 977 aaPredicted RBP9.96□□□□□ -0.82
RFX3-209ENST00000451859 CTAGE1Q96RT6 745 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 RBM28Q9NW13 759 aaKnown RBP9.96□□□□□ -0.82
RFX3-209ENST00000451859 KIAA1468Q9P260 1216 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 MSRAQ9UJ68 235 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 YBX2Q9Y2T7 364 aaKnown RBP9.96□□□□□ -0.82
RFX3-209ENST00000451859 TELO2Q9Y4R8 837 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 TRANK1O15050 2925 aa9.96□□□□□ -0.82
RFX3-209ENST00000451859 TMEM265A0A087WTH1 108 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 SPATA31C2B4DYI2 1134 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 HAS3O00219 553 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 PIK3CDO00329 1044 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 PPFIA3O75145 1194 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 PPFIA4O75335 1185 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 TGFB3P10600 412 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 ACTN1P12814 892 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 CDC27P30260 824 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 NEDD9Q14511 834 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 HIC1Q14526 733 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 RAB30Q15771 203 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 PCNX4Q63HM2 1172 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 BLOC1S2Q6QNY1 142 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 LRRC8DQ7L1W4 858 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 NLRX1Q86UT6 975 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 SESTD1Q86VW0 696 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 AFAP1L1Q8TED9 768 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 PPM1EQ8WY54 764 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 BRF1Q92994 677 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 WNT8BQ93098 351 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 PRDM12Q9H4Q4 367 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 PCDHA6Q9UN73 950 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 PCDHA8Q9Y5H6 950 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 SNX14Q9Y5W7 946 aa9.95□□□□□ -0.82
RFX3-209ENST00000451859 TCF20Q9UGU0 1960 aaKnown RBP9.95□□□□□ -0.82
RFX3-209ENST00000451859 H3BRB1 525 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 STAM2O75886 525 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 PFKMP08237 780 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 HMGB1P09429 215 aaKnown RBP9.94□□□□□ -0.82
RFX3-209ENST00000451859 SMIM10L2AP0DMW4 78 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 SMIM10L2BP0DMW5 78 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 CKBP12277 381 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 HOXD8P13378 290 aaPredicted RBP9.94□□□□□ -0.82
RFX3-209ENST00000451859 SELPP16109 830 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 ATP2A2P16615 1042 aaKnown RBP9.94□□□□□ -0.82
RFX3-209ENST00000451859 ICAM3P32942 547 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 HSPA4P34932 840 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 RFC2P35250 354 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 THPOP40225 353 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 METAP2P50579 478 aaKnown RBP eCLIP9.94□□□□□ -0.82
RFX3-209ENST00000451859 TSGA10IPQ3SY00 556 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 PPP2R2DQ66LE6 453 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 TYW1BQ6NUM6 668 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 METTL7BQ6UX53 244 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 CAGE1Q8TC20 777 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 ATP6V0A1Q93050 837 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 GPR20Q99678 358 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 C16orf70Q9BSU1 422 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 TUT1Q9H6E5 874 aaKnown RBP9.94□□□□□ -0.82
RFX3-209ENST00000451859 TMEM260Q9NX78 707 aa9.94□□□□□ -0.82
RFX3-209ENST00000451859 V9GY48 417 aaPredicted RBP9.94□□□□□ -0.82
RFX3-209ENST00000451859 PRRC2BQ5JSZ5 2229 aaKnown RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms