RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 FERP16591 822 aa13.42□□□□□ -0.26
TCOF1-205ENST00000439160 MXI1P50539 228 aa13.42□□□□□ -0.26
TCOF1-205ENST00000439160 SLC15A2Q16348 729 aa13.42□□□□□ -0.26
TCOF1-205ENST00000439160 Q3C1V9 767 aa13.42□□□□□ -0.26
TCOF1-205ENST00000439160 PRAMEF18Q5VWM3 479 aa13.42□□□□□ -0.26
TCOF1-205ENST00000439160 SESTD1Q86VW0 696 aa13.42□□□□□ -0.26
TCOF1-205ENST00000439160 TSNARE1Q96NA8 513 aa13.42□□□□□ -0.26
TCOF1-205ENST00000439160 RABEP2Q9H5N1 569 aa13.42□□□□□ -0.26
TCOF1-205ENST00000439160 TNS2Q63HR2 1409 aa13.42□□□□□ -0.26
TCOF1-205ENST00000439160 IPO5O00410 1097 aaKnown RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 FCER1AP12319 257 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 LACTBP83111 547 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 PTK2Q05397 1052 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 DHX40Q8IX18 779 aaKnown RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 CCDC63Q8NA47 563 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 HPS3Q969F9 1004 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 PDLIM2Q96JY6 352 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 HOXC10Q9NYD6 342 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 CNOT7Q9UIV1 285 aaKnown RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 BZW2Q9Y6E2 419 aaKnown RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 SIGLEC1Q9BZZ2 1709 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 CNTNAP5Q8WYK1 1306 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 WTIPA6NIX2 430 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 PSMD14O00487 310 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 CXCR5P32302 372 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 NSFP46459 744 aaKnown RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 PRELPP51888 382 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 HMGCS2P54868 508 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 NFIAQ12857 509 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 COASYQ13057 564 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 MESDQ14696 234 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 TXNDC16Q9P2K2 825 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 BAZ2BQ9UIF8 2168 aaKnown RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 PVALEFA0A1B0GWK0 134 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 DAPK3O43293 454 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 SRGAP2CP0DJJ0 459 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 ATP2A2P16615 1042 aaKnown RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 MFAP3P55082 362 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 PPP4CP60510 307 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 GRIN1Q05586 938 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 C10orf67Q8IYJ2 551 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 IPO4Q8TEX9 1081 aaKnown RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 UBE2TQ9NPD8 197 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 ANAPC4Q9UJX5 808 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 DPEP1P16444 411 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 YWHAEP62258 255 aaKnown RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 TFAMQ00059 246 aaKnown RBP13.41□□□□□ -0.26
TCOF1-205ENST00000439160 PADI6Q6TGC4 694 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 PANX2Q96RD6 677 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 FAM204AQ9H8W3 233 aa13.41□□□□□ -0.26
TCOF1-205ENST00000439160 GOLGA6CA6NDK9 693 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 E7EVH7 732 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 GOLGA6DP0CG33 693 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 OTUD5Q96G74 571 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 GOLGA6AQ9NYA3 693 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 ZNF70Q9UC06 446 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-205ENST00000439160 LGALS16A8MUM7 142 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 K7ERI5 159 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 IRX5P78411 483 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-205ENST00000439160 RSBN1LQ6PCB5 846 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-205ENST00000439160 ZBTB33Q86T24 672 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 SLC17A8Q8NDX2 589 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 TMEM39BQ9GZU3 492 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 SNX16P57768 344 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 TFDP1Q14186 410 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 NSUN6Q8TEA1 469 aaKnown RBP13.4□□□□□ -0.26
TCOF1-205ENST00000439160 BPIFA3Q9BQP9 254 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 DPH5Q9H2P9 285 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 RGL1Q9NZL6 768 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 NWD1Q149M9 1564 aa13.4□□□□□ -0.26
TCOF1-205ENST00000439160 EBAG9O00559 213 aa13.4□□□□□ -0.27
TCOF1-205ENST00000439160 ENTPD3O75355 529 aa13.4□□□□□ -0.27
TCOF1-205ENST00000439160 USP11P51784 963 aa13.4□□□□□ -0.27
TCOF1-205ENST00000439160 KIF11P52732 1056 aa13.4□□□□□ -0.27
TCOF1-205ENST00000439160 AFAP1L1Q8TED9 768 aa13.4□□□□□ -0.27
TCOF1-205ENST00000439160 SH2D3AQ9BRG2 576 aa13.4□□□□□ -0.27
TCOF1-205ENST00000439160 PCDHB4Q9Y5E5 795 aa13.4□□□□□ -0.27
TCOF1-205ENST00000439160 WDR64B1ANS9 1081 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 STXBP3O00186 592 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 FTCDO95954 541 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 GAS8O95995 478 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 LMNB1P20700 586 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 MTMR2Q13614 643 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 SCYL2Q6P3W7 929 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 NLRP4Q96MN2 994 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 NSRP1Q9H0G5 558 aaKnown RBP13.39□□□□□ -0.27
TCOF1-205ENST00000439160 TMEM60Q9H2L4 133 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 NYAP2Q9P242 653 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 ZMYND10O75800 440 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 ATF7P17544 494 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-205ENST00000439160 PPP1R21Q6ZMI0 780 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 PTF1AQ7RTS3 328 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 SRGAP1Q7Z6B7 1085 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 DPF2Q92785 391 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 JPH2Q9BR39 696 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-205ENST00000439160 MOCS3O95396 460 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 IVLP07476 585 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 BRD3Q15059 726 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 PPP4R3CPQ6ZMV5 832 aa13.39□□□□□ -0.27
TCOF1-205ENST00000439160 TRIM9Q9C026 710 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms